Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01637 ATGGCGATTAGGGTTAGGCCATTCACCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCGAATATTATTCAGGCTCCCCTTTCTGCACTATTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAATCCGAGGCATTGATAAGTGCACGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACCAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGGCTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCCTGGCATCAGAGCTTAGCCAGGGCGATTCTGCTACTGAACGTGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGCAAGTGCTGATGGAGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACCATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTGGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCCCCCAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGAAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTTGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCATCTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAGGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTAAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGTGTTGTTATCATATTGTTCATTTCGATATCAATTTCGGATTGGATGGTGCTATGTGCAGGTTTTCTAAGCCATTTTCTTCAAGCCCCTCAAGAGGCTTTGTGGTTTGAAGAGCTGAAGCCAGCCATTGCATTTTTACCTACTACACAAAATGTACATCTAACTAATACTGTGTTGCTGCTACCTTGGAGAAAGCAAAGACTGGCGCTTGTGAACTCGGAAAGGCGAATTCGAAATCGACATGTATACATAATAGTCCTTTTTGTGCTACAGCGGAGGACGGTGGTCGATGTTCAAGAGGAGTTCTTTACCCTTATATGCAAATTTCATGAATTGTGA 1677 44.84 MAIRVRPFTRMEGSGSDPDSHRAASTSSSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLASELSQGDSATERGAREGIPQSINASADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPIWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSECVVIILFISISISDWMVLCAGFLSHFLQAPQEALWFEELKPAIAFLPTTQNVHLTNTVLLLPWRKQRLALVNSERRIRNRHVYIIVLFVLQRRTVVDVQEEFFTLICKFHEL 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14797902 14808140 + Lsi01G016370.1 Lsi01g01637 654295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01637 558 MobiDBLite consensus disorder prediction 149 185 - -
Lsi01g01637 558 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 11 447 IPR044235 GO:0061630|GO:1904294
Lsi01g01637 558 Pfam RING-type zinc-finger 420 444 IPR027370 -
Lsi01g01637 558 SMART ring_2 420 450 IPR001841 -
Lsi01g01637 558 SUPERFAMILY RING/U-box 415 447 - -
Lsi01g01637 558 ProSiteProfiles Zinc finger RING-type profile. 420 446 IPR001841 -
Lsi01g01637 558 MobiDBLite consensus disorder prediction 1 28 - -
Lsi01g01637 558 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Lsi01g01637 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 450 IPR013083 -
Lsi01g01637 558 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01637 Lsi-Chr1:14797902 Lsi04g01005 Lsi-Chr4:11273786 1.87E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01637 - K22379 csv:101205267 811.986