Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01645 ATGCGAGCAGCGGTGATAATGAGCACTTCGACACTCGTTGAGAATGGGGGTTTTAGGGCTGGATCTAAAAGCTCTCCAACGTGTTGCAGATCCTTCGGCCATGAGAGGAGGAAATTTAATCGCAGATCGATGGGGAGTTCTGGATTCTCATGGAAATTGCCGGATCATCCTAAGCTTCCTAAGGATAAGATAGTGGGTCTTATTGTTTTGGATGGGTGGGGTGAAGCTAACCCAGATCGCTACAATTGTATCCATGTTGCTGAAACTCCCACCATGGATTCCCTTAAGAAGGGAGCTCCTGAACATTGGAGGTTGCTCAGGGCACATGGTAAGGCTGTAGGACTTCCTACTGAAGATGACATGGGCAACAGTGAGGTTGGACATAATGCGCTTGGTGCTGGACGTATTTATGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTTGCCTCTGGAAAAATATATGACGGAGAAGGTTTCAAATACATCAAGGAATCCTTTGAAACCGGCACTTTGCATCTTATAGGATTACTGAGTGATGGTGGAGTGCACTCTAGGCTAGACCAGGTTCAGTTGTTACTCAAAGGAGCAAGTGAGCGTGGTGCTAAAAGAATCCGTGTCCATATACTTACTGATGGGCGTGATGTTTTGGATGGTTCAAGTGTAGGCTTTGTAGAGACTCTTGAAAATGACCTTGCCAAATTACGTGAGAAGGGGGTTGATGCACAAATAGCATCTGGTGGAGGCCGTATGTATGTGACTATGGATCGTTACGAGAATGATTGGGAAGTTGTGAAGCGAGGATGGGATGCACAAGTGCTAGGCGAAGCACCACACAAGTTCAAAAGTGCTCTTGAAGCTGTCAAGAAATTAAGAGAGGAACCCAAGGCAAATGATCAATATTTACCTCCATTCGTCATAGTTGATGATAGTGGGAAATCTGTAGGCCCAATAGTGGATGGTGATGCAGTCGTTACCTTCAATTTTAGAGCAGATCGAATGGTTATGATTGCCAAGGCCCTTGAGTATGAAAATTTTGATAAATTTGATCGAGTTAGGTTCCCTAAAATTCGTTATGCTGGAATGCTTCAGTATGATGGTGAACTGAAGCTTCCAAGCCATTACCTTGTTTCTCCCCCAGAAATTGAGAGAACATCTGGGGAATATCTCGTGCACAATGGCGTTCGAACCTTTGCCTGCAGTGAGACCGTTAAGTTTGGTCATGTTACTTTCTTCTGGAATGGAAACCGTTCTGGATATTTCAACCCAGAAATGGAGGAATACGTGGAGATTCCTAGTGATTCTGGGATCACTTTTAATGTTAAGCCAAATATGAAGGCTATAGAAATCGCTGAGAAGGCAAGAGATGCTATTCTTAGCCGGAAATTCCAGCAGGTACGTGTTAACCTGCCGAATGGTGACATGGTGGGACACACTGGTGATATTGAGGCCACAGTTGTAGCTTGCAAGGCTGCTGATGATGCTGTAAAAATGATCCTCGATGCAATTGAACAAGTAGGGGGAATTTACGTCGTCACTGCGGATCATGGAAATGCAGAGGACATGGTGAAGAGAGGCAAGTCTGGGGAGCCTCTTCTCGACAAAAGTGGCAAAATTCAAATCCTCACTTCTCACACTCTTCAGCCGATCCCTGATCGAATCGTCATGGTTCATTTGAAATTATTCTTAAGTTCGAAGAAGAAAACGGTTCCTATTGCGATTGGAGGTCCGGGACTGACCCCTGGAGTTAGATTCCGTAATGATGTCCCTACTGGAGGACTGGCCAATGTTGCTGCAACTGTTATCAATCTACATGGTTATGAAGCTCCGAGCGACTACGAGACGACCCTAATTGAAGGTTCATTCATTGCTTTTCAATCGTCAGTTTCACGATCCAATCACCAAAAATCAATCCACCATTATCAATCGATCGATCTTCACAAAGAAGAAGAAGAAGAATCAGAATCAGCAGCCATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGTGAAGGAACTTACGGGAAAGTCTACAAGGCCAAAGACAAGGAGACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTTGAAATGGACGAAGAAGGCGTTCCACCGACGGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAGTCTCTCTATGTCGTTCGTCTTCTCTGCGTCGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGTAAGGGCCCCAATCCTAGGCCTCTTCCTTCCACTCTCGTTCAGAGTTTCCTGTTTCAGCTATGTAAGGGCGTTGCGCATTGTCATAGTCATGGCGTTCTTCACCGTGATCTCAAGCCGCAGAATCTACTTCTGGATCAGGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGCCTTGGACGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGATCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGGTAATTTCTTACGCTTTAATTTTCTTTTTCATCGTAATGGTGAATTTGTCTTCACCGTCGTTATCAATCGATCAAATTACTCATTGATTTTTATCCGGACAATGCCAGCTGAAATGGTGAGAAGGCAGGCACTGTTCCCCGGAGATTCTGAGTTCCAGCAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCCACCGAGAAACAATGGCCTGGAGTTAGTTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCCTGGAAGCCGAGGGTGTTGACCTTCTTTCGGTTGGTCCTCCGGAAAATATAACCTATCTACTTCTTAGATCACTAGAGGAGGTCAATGACTCAATTGAGAGGTGTTCATCAACCAAAGCTTATGTAGTTACTGTTTCTAAAGGAAGAATCTCAGCGAAAGCAGCTCTAGATCATCCGTATTTTGACAGCCTCGACAAGTCTCAGTATTAA 3084 45.1 MRAAVIMSTSTLVENGGFRAGSKSSPTCCRSFGHERRKFNRRSMGSSGFSWKLPDHPKLPKDKIVGLIVLDGWGEANPDRYNCIHVAETPTMDSLKKGAPEHWRLLRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYDGEGFKYIKESFETGTLHLIGLLSDGGVHSRLDQVQLLLKGASERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAKLREKGVDAQIASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKSALEAVKKLREEPKANDQYLPPFVIVDDSGKSVGPIVDGDAVVTFNFRADRMVMIAKALEYENFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDSGITFNVKPNMKAIEIAEKARDAILSRKFQQVRVNLPNGDMVGHTGDIEATVVACKAADDAVKMILDAIEQVGGIYVVTADHGNAEDMVKRGKSGEPLLDKSGKIQILTSHTLQPIPDRIVMVHLKLFLSSKKKTVPIAIGGPGLTPGVRFRNDVPTGGLANVAATVINLHGYEAPSDYETTLIEGSFIAFQSSVSRSNHQKSIHHYQSIDLHKEEEEESESAAMEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFGNFLRFNFLFHRNGEFVFTVVINRSNYSLIFIRTMPAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEAEGVDLLSVGPPENITYLLLRSLEEVNDSIERCSSTKAYVVTVSKGRISAKAALDHPYFDSLDKSQY 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14915745 14937117 - Lsi01G016450.1 Lsi01g01645 654303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01645 1027 ProSitePatterns Protein kinases ATP-binding region signature. 667 690 IPR017441 GO:0005524
Lsi01g01645 1027 SUPERFAMILY Protein kinase-like (PK-like) 657 886 IPR011009 -
Lsi01g01645 1027 ProSiteProfiles Protein kinase domain profile. 661 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01645 1027 Gene3D Transferase(Phosphotransferase) domain 1 749 1027 - -
Lsi01g01645 1027 Pfam Protein kinase domain 661 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01645 1027 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED 44 552 - -
Lsi01g01645 1027 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 139 374 IPR036646 GO:0004619|GO:0005737
Lsi01g01645 1027 TIGRFAM pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 65 557 IPR005995 GO:0004619|GO:0006007
Lsi01g01645 1027 Gene3D - 139 383 IPR036646 GO:0004619|GO:0005737
Lsi01g01645 1027 SMART serkin_6 661 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01645 1027 Gene3D Alkaline Phosphatase, subunit A 66 609 IPR017850 -
Lsi01g01645 1027 SUPERFAMILY Alkaline phosphatase-like 67 611 IPR017850 -
Lsi01g01645 1027 Coils Coil 224 244 - -
Lsi01g01645 1027 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 44 552 IPR005995 GO:0004619|GO:0006007
Lsi01g01645 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Lsi01g01645 1027 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 559 618 IPR005995 GO:0004619|GO:0006007
Lsi01g01645 1027 Coils Coil 647 667 - -
Lsi01g01645 1027 SUPERFAMILY Protein kinase-like (PK-like) 899 1022 IPR011009 -
Lsi01g01645 1027 Pfam Metalloenzyme superfamily 64 553 IPR006124 GO:0003824|GO:0046872
Lsi01g01645 1027 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED 559 618 - -
Lsi01g01645 1027 Pfam BPG-independent PGAM N-terminus (iPGM_N) 145 365 IPR011258 GO:0004619|GO:0005737|GO:0006007|GO:0030145
Lsi01g01645 1027 CDD iPGM 65 617 IPR005995 GO:0004619|GO:0006007
Lsi01g01645 1027 Gene3D Phosphorylase Kinase; domain 1 644 748 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01645 Lsi-Chr1:14915745 Lsi04g02422 Lsi-Chr4:31327953 1.83E-126 dispersed
Lsi01g01645 Lsi-Chr1:14915745 Lsi08g01606 Lsi-Chr8:24018415 2.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83301 PF01676 Metalloenzyme 6.70E-98 CL0088 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01645 K15633 - csv:101217925 1069.3