Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01645 | ATGCGAGCAGCGGTGATAATGAGCACTTCGACACTCGTTGAGAATGGGGGTTTTAGGGCTGGATCTAAAAGCTCTCCAACGTGTTGCAGATCCTTCGGCCATGAGAGGAGGAAATTTAATCGCAGATCGATGGGGAGTTCTGGATTCTCATGGAAATTGCCGGATCATCCTAAGCTTCCTAAGGATAAGATAGTGGGTCTTATTGTTTTGGATGGGTGGGGTGAAGCTAACCCAGATCGCTACAATTGTATCCATGTTGCTGAAACTCCCACCATGGATTCCCTTAAGAAGGGAGCTCCTGAACATTGGAGGTTGCTCAGGGCACATGGTAAGGCTGTAGGACTTCCTACTGAAGATGACATGGGCAACAGTGAGGTTGGACATAATGCGCTTGGTGCTGGACGTATTTATGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTTGCCTCTGGAAAAATATATGACGGAGAAGGTTTCAAATACATCAAGGAATCCTTTGAAACCGGCACTTTGCATCTTATAGGATTACTGAGTGATGGTGGAGTGCACTCTAGGCTAGACCAGGTTCAGTTGTTACTCAAAGGAGCAAGTGAGCGTGGTGCTAAAAGAATCCGTGTCCATATACTTACTGATGGGCGTGATGTTTTGGATGGTTCAAGTGTAGGCTTTGTAGAGACTCTTGAAAATGACCTTGCCAAATTACGTGAGAAGGGGGTTGATGCACAAATAGCATCTGGTGGAGGCCGTATGTATGTGACTATGGATCGTTACGAGAATGATTGGGAAGTTGTGAAGCGAGGATGGGATGCACAAGTGCTAGGCGAAGCACCACACAAGTTCAAAAGTGCTCTTGAAGCTGTCAAGAAATTAAGAGAGGAACCCAAGGCAAATGATCAATATTTACCTCCATTCGTCATAGTTGATGATAGTGGGAAATCTGTAGGCCCAATAGTGGATGGTGATGCAGTCGTTACCTTCAATTTTAGAGCAGATCGAATGGTTATGATTGCCAAGGCCCTTGAGTATGAAAATTTTGATAAATTTGATCGAGTTAGGTTCCCTAAAATTCGTTATGCTGGAATGCTTCAGTATGATGGTGAACTGAAGCTTCCAAGCCATTACCTTGTTTCTCCCCCAGAAATTGAGAGAACATCTGGGGAATATCTCGTGCACAATGGCGTTCGAACCTTTGCCTGCAGTGAGACCGTTAAGTTTGGTCATGTTACTTTCTTCTGGAATGGAAACCGTTCTGGATATTTCAACCCAGAAATGGAGGAATACGTGGAGATTCCTAGTGATTCTGGGATCACTTTTAATGTTAAGCCAAATATGAAGGCTATAGAAATCGCTGAGAAGGCAAGAGATGCTATTCTTAGCCGGAAATTCCAGCAGGTACGTGTTAACCTGCCGAATGGTGACATGGTGGGACACACTGGTGATATTGAGGCCACAGTTGTAGCTTGCAAGGCTGCTGATGATGCTGTAAAAATGATCCTCGATGCAATTGAACAAGTAGGGGGAATTTACGTCGTCACTGCGGATCATGGAAATGCAGAGGACATGGTGAAGAGAGGCAAGTCTGGGGAGCCTCTTCTCGACAAAAGTGGCAAAATTCAAATCCTCACTTCTCACACTCTTCAGCCGATCCCTGATCGAATCGTCATGGTTCATTTGAAATTATTCTTAAGTTCGAAGAAGAAAACGGTTCCTATTGCGATTGGAGGTCCGGGACTGACCCCTGGAGTTAGATTCCGTAATGATGTCCCTACTGGAGGACTGGCCAATGTTGCTGCAACTGTTATCAATCTACATGGTTATGAAGCTCCGAGCGACTACGAGACGACCCTAATTGAAGGTTCATTCATTGCTTTTCAATCGTCAGTTTCACGATCCAATCACCAAAAATCAATCCACCATTATCAATCGATCGATCTTCACAAAGAAGAAGAAGAAGAATCAGAATCAGCAGCCATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGTGAAGGAACTTACGGGAAAGTCTACAAGGCCAAAGACAAGGAGACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTTGAAATGGACGAAGAAGGCGTTCCACCGACGGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAGTCTCTCTATGTCGTTCGTCTTCTCTGCGTCGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGTAAGGGCCCCAATCCTAGGCCTCTTCCTTCCACTCTCGTTCAGAGTTTCCTGTTTCAGCTATGTAAGGGCGTTGCGCATTGTCATAGTCATGGCGTTCTTCACCGTGATCTCAAGCCGCAGAATCTACTTCTGGATCAGGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGCCTTGGACGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGATCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGGTAATTTCTTACGCTTTAATTTTCTTTTTCATCGTAATGGTGAATTTGTCTTCACCGTCGTTATCAATCGATCAAATTACTCATTGATTTTTATCCGGACAATGCCAGCTGAAATGGTGAGAAGGCAGGCACTGTTCCCCGGAGATTCTGAGTTCCAGCAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCCACCGAGAAACAATGGCCTGGAGTTAGTTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCCTGGAAGCCGAGGGTGTTGACCTTCTTTCGGTTGGTCCTCCGGAAAATATAACCTATCTACTTCTTAGATCACTAGAGGAGGTCAATGACTCAATTGAGAGGTGTTCATCAACCAAAGCTTATGTAGTTACTGTTTCTAAAGGAAGAATCTCAGCGAAAGCAGCTCTAGATCATCCGTATTTTGACAGCCTCGACAAGTCTCAGTATTAA | 3084 | 45.1 | MRAAVIMSTSTLVENGGFRAGSKSSPTCCRSFGHERRKFNRRSMGSSGFSWKLPDHPKLPKDKIVGLIVLDGWGEANPDRYNCIHVAETPTMDSLKKGAPEHWRLLRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYDGEGFKYIKESFETGTLHLIGLLSDGGVHSRLDQVQLLLKGASERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAKLREKGVDAQIASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKSALEAVKKLREEPKANDQYLPPFVIVDDSGKSVGPIVDGDAVVTFNFRADRMVMIAKALEYENFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDSGITFNVKPNMKAIEIAEKARDAILSRKFQQVRVNLPNGDMVGHTGDIEATVVACKAADDAVKMILDAIEQVGGIYVVTADHGNAEDMVKRGKSGEPLLDKSGKIQILTSHTLQPIPDRIVMVHLKLFLSSKKKTVPIAIGGPGLTPGVRFRNDVPTGGLANVAATVINLHGYEAPSDYETTLIEGSFIAFQSSVSRSNHQKSIHHYQSIDLHKEEEEESESAAMEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFGNFLRFNFLFHRNGEFVFTVVINRSNYSLIFIRTMPAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEAEGVDLLSVGPPENITYLLLRSLEEVNDSIERCSSTKAYVVTVSKGRISAKAALDHPYFDSLDKSQY | 1027 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 14915745 | 14937117 | - | Lsi01G016450.1 | Lsi01g01645 | 654303 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01645 | 1027 | ProSitePatterns | Protein kinases ATP-binding region signature. | 667 | 690 | IPR017441 | GO:0005524 | |
| Lsi01g01645 | 1027 | SUPERFAMILY | Protein kinase-like (PK-like) | 657 | 886 | IPR011009 | - | |
| Lsi01g01645 | 1027 | ProSiteProfiles | Protein kinase domain profile. | 661 | 1019 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi01g01645 | 1027 | Gene3D | Transferase(Phosphotransferase) domain 1 | 749 | 1027 | - | - | |
| Lsi01g01645 | 1027 | Pfam | Protein kinase domain | 661 | 886 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi01g01645 | 1027 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED | 44 | 552 | - | - | |
| Lsi01g01645 | 1027 | SUPERFAMILY | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | 139 | 374 | IPR036646 | GO:0004619|GO:0005737 | |
| Lsi01g01645 | 1027 | TIGRFAM | pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) | 65 | 557 | IPR005995 | GO:0004619|GO:0006007 | |
| Lsi01g01645 | 1027 | Gene3D | - | 139 | 383 | IPR036646 | GO:0004619|GO:0005737 | |
| Lsi01g01645 | 1027 | SMART | serkin_6 | 661 | 1019 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi01g01645 | 1027 | Gene3D | Alkaline Phosphatase, subunit A | 66 | 609 | IPR017850 | - | |
| Lsi01g01645 | 1027 | SUPERFAMILY | Alkaline phosphatase-like | 67 | 611 | IPR017850 | - | |
| Lsi01g01645 | 1027 | Coils | Coil | 224 | 244 | - | - | |
| Lsi01g01645 | 1027 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE | 44 | 552 | IPR005995 | GO:0004619|GO:0006007 | |
| Lsi01g01645 | 1027 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 791 | 803 | IPR008271 | GO:0004672|GO:0006468 | |
| Lsi01g01645 | 1027 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE | 559 | 618 | IPR005995 | GO:0004619|GO:0006007 | |
| Lsi01g01645 | 1027 | Coils | Coil | 647 | 667 | - | - | |
| Lsi01g01645 | 1027 | SUPERFAMILY | Protein kinase-like (PK-like) | 899 | 1022 | IPR011009 | - | |
| Lsi01g01645 | 1027 | Pfam | Metalloenzyme superfamily | 64 | 553 | IPR006124 | GO:0003824|GO:0046872 | |
| Lsi01g01645 | 1027 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED | 559 | 618 | - | - | |
| Lsi01g01645 | 1027 | Pfam | BPG-independent PGAM N-terminus (iPGM_N) | 145 | 365 | IPR011258 | GO:0004619|GO:0005737|GO:0006007|GO:0030145 | |
| Lsi01g01645 | 1027 | CDD | iPGM | 65 | 617 | IPR005995 | GO:0004619|GO:0006007 | |
| Lsi01g01645 | 1027 | Gene3D | Phosphorylase Kinase; domain 1 | 644 | 748 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01645 | K15633 | gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] | - | csv:101217925 | 1069.3 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01645 | Lsi-Chr1:14915745 | Lsi04g02422 | Lsi-Chr4:31327953 | 1.83E-126 | dispersed | |
| Lsi01g01645 | Lsi-Chr1:14915745 | Lsi08g01606 | Lsi-Chr8:24018415 | 2.70E-58 | transposed |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lsi04g00138 | . | 12 | 314 | Core Cell Cycle Gene Families | AT3G48750 | 82.8 | 6.1e-148 | 520.4 | |
| Lsi04g02422 | . | 11 | 320 | Core Cell Cycle Gene Families | AT3G48750 | 51.1 | 1.2e-90 | 330.1 | |
| Lsi11g00111 | . | 1421 | 1584 | Core Cell Cycle Gene Families | AT3G48750 | 51.8 | 3.2e-48 | 189.1 | |
| Lsi01g01645 | . | 658 | 1027 | Core Cell Cycle Gene Families | AT3G54180 | 68.7 | 1.0e-137 | 486.5 | |
| Lsi04g02422 | . | 11 | 322 | Core Cell Cycle Gene Families | AT3G54180 | 63.6 | 4.2e-115 | 411.4 | |
| Lsi04g00138 | . | 14 | 310 | Core Cell Cycle Gene Families | AT3G54180 | 52.9 | 7.9e-90 | 327.4 | |
| Lsi11g00111 | . | 1422 | 1585 | Core Cell Cycle Gene Families | AT3G54180 | 63.5 | 6.8e-57 | 218.0 | |
| Lsi01g01645 | . | 658 | 1027 | Core Cell Cycle Gene Families | AT2G38620 | 57.8 | 1.5e-107 | 386.0 | |
| Lsi04g02422 | . | 11 | 322 | Core Cell Cycle Gene Families | AT2G38620 | 55.1 | 2.2e-90 | 328.9 | |
| Lsi11g00111 | . | 1467 | 1585 | Core Cell Cycle Gene Families | AT2G38620 | 73.1 | 8.5e-50 | 194.1 | |
| Lsi04g02422 | . | 1 | 320 | Core Cell Cycle Gene Families | AT1G76540 | 81.3 | 2.3e-153 | 538.5 | |
| Lsi01g01645 | . | 656 | 1022 | Core Cell Cycle Gene Families | AT1G76540 | 53.1 | 3.7e-103 | 371.7 | |
| Lsi04g00138 | . | 1 | 310 | Core Cell Cycle Gene Families | AT1G76540 | 50.9 | 8.6e-92 | 334.0 | |
| Lsi11g00111 | . | 1398 | 1585 | Core Cell Cycle Gene Families | AT1G76540 | 72.3 | 3.1e-73 | 272.3 | |
| Lsi04g02422 | . | 8 | 320 | Core Cell Cycle Gene Families | AT1G20930 | 85.3 | 7.7e-157 | 550.1 | |
| Lsi01g01645 | . | 656 | 1025 | Core Cell Cycle Gene Families | AT1G20930 | 54.2 | 6.2e-106 | 380.9 | |
| Lsi04g00138 | . | 12 | 310 | Core Cell Cycle Gene Families | AT1G20930 | 53.4 | 1.2e-93 | 340.1 | |
| Lsi11g00111 | . | 1426 | 1585 | Core Cell Cycle Gene Families | AT1G20930 | 81.3 | 2.1e-74 | 276.2 | |
| Lsi10g00941 | . | 1 | 504 | Core Cell Cycle Gene Families | AT5G10270 | 72.9 | 9.9e-207 | 716.5 | |
| Lsi03g01376 | . | 1 | 409 | Core Cell Cycle Gene Families | AT5G10270 | 62.7 | 1.3e-158 | 556.6 | |
| Lsi05g00144 | . | 123 | 439 | Core Cell Cycle Gene Families | AT5G10270 | 54.7 | 1.3e-97 | 354.0 | |
| Lsi05g01501 | . | 105 | 421 | Core Cell Cycle Gene Families | AT5G10270 | 52.9 | 3.8e-97 | 352.4 | |
| Lsi02g00524 | . | 93 | 409 | Core Cell Cycle Gene Families | AT5G10270 | 53.2 | 8.4e-97 | 351.3 | |
| Lsi08g00053 | . | 137 | 453 | Core Cell Cycle Gene Families | AT5G10270 | 52.7 | 7.1e-96 | 348.2 | |
| Lsi11g00052 | . | 149 | 465 | Core Cell Cycle Gene Families | AT5G10270 | 52.1 | 1.2e-95 | 347.4 | |
| Lsi11g00478 | CCT,ECH | 736 | 1054 | Core Cell Cycle Gene Families | AT5G10270 | 51.3 | 7.8e-95 | 344.7 | |
| Lsi02g00092 | . | 119 | 437 | Core Cell Cycle Gene Families | AT5G10270 | 50.4 | 1.1e-91 | 334.3 | |
| Lsi10g00900 | . | 124 | 338 | Core Cell Cycle Gene Families | AT5G10270 | 55.5 | 2.8e-68 | 256.5 | |
| Lsi10g00941 | . | 65 | 503 | Core Cell Cycle Gene Families | AT5G64960 | 72.5 | 3.6e-171 | 598.2 | |
| Lsi03g01376 | . | 65 | 462 | Core Cell Cycle Gene Families | AT5G64960 | 56.6 | 6.9e-122 | 434.5 | |
| Lsi05g00144 | . | 177 | 439 | Core Cell Cycle Gene Families | AT5G64960 | 54.3 | 1.2e-81 | 300.8 | |
| Lsi02g00524 | . | 147 | 409 | Core Cell Cycle Gene Families | AT5G64960 | 52.9 | 3.4e-81 | 299.3 | |
| Lsi11g00052 | . | 203 | 465 | Core Cell Cycle Gene Families | AT5G64960 | 52.9 | 2.2e-80 | 296.6 | |
| Lsi05g01501 | . | 159 | 421 | Core Cell Cycle Gene Families | AT5G64960 | 51.8 | 3.8e-80 | 295.8 | |
| Lsi08g00053 | . | 191 | 453 | Core Cell Cycle Gene Families | AT5G64960 | 52.9 | 4.2e-79 | 292.4 | |
| Lsi10g00900 | . | 829 | 1102 | Core Cell Cycle Gene Families | AT5G64960 | 51.6 | 7.2e-79 | 291.6 | |
| Lsi06g01303 | . | 4 | 398 | Core Cell Cycle Gene Families | AT1G73690 | 72.9 | 9.0e-163 | 570.1 | |
| Lsi06g01303 | . | 12 | 342 | Core Cell Cycle Gene Families | AT1G66750 | 77.7 | 2.1e-155 | 545.4 | |
| Lsi06g01303 | . | 8 | 398 | Core Cell Cycle Gene Families | AT1G18040 | 74.4 | 1.4e-163 | 572.8 | |
| Lsi01g01935 | . | 29 | 234 | Core Cell Cycle Gene Families | AT5G63610 | 87.9 | 3.1e-101 | 365.9 | |
| Lsi01g01934 | . | 1 | 154 | Core Cell Cycle Gene Families | AT5G63610 | 60.9 | 4.6e-41 | 166.0 | |
| Lsi11g00250 | CCT | 237 | 749 | Core Cell Cycle Gene Families | AT4G28980 | 58.7 | 2.0e-169 | 592.4 | |
| Lsi08g00456 | . | 5 | 499 | Core Cell Cycle Gene Families | AT1G44110 | 60.8 | 7.5e-153 | 537.3 | |
| Lsi08g01152 | . | 195 | 463 | Core Cell Cycle Gene Families | AT1G44110 | 50.9 | 2.1e-70 | 263.5 | |
| Lsi08g01152 | . | 70 | 475 | Core Cell Cycle Gene Families | AT5G25380 | 51.9 | 1.8e-95 | 346.7 | |
| Lsi08g00456 | . | 217 | 492 | Core Cell Cycle Gene Families | AT5G25380 | 55.4 | 3.3e-81 | 299.3 | |
| Lsi02g02759 | . | 223 | 469 | Core Cell Cycle Gene Families | AT5G25380 | 52.0 | 2.7e-75 | 279.6 | |
| Lsi04g01508 | CCT,ECH | 232 | 479 | Core Cell Cycle Gene Families | AT5G25380 | 52.0 | 1.6e-67 | 253.8 | |
| Lsi08g01152 | . | 188 | 413 | Core Cell Cycle Gene Families | AT5G11300 | 64.6 | 5.8e-72 | 268.5 | |
| Lsi08g00456 | . | 208 | 437 | Core Cell Cycle Gene Families | AT5G11300 | 56.5 | 4.6e-69 | 258.8 | |
| Lsi04g01508 | CCT,ECH | 231 | 423 | Core Cell Cycle Gene Families | AT5G11300 | 55.4 | 4.6e-53 | 205.7 | |
| Lsi03g00554 | . | 119 | 285 | Core Cell Cycle Gene Families | AT5G11300 | 53.6 | 1.0e-44 | 177.9 | |
| Lsi02g02759 | . | 189 | 469 | Core Cell Cycle Gene Families | AT1G15570 | 54.7 | 6.1e-91 | 331.6 | |
| Lsi08g00456 | . | 218 | 496 | Core Cell Cycle Gene Families | AT1G15570 | 54.1 | 2.4e-79 | 293.1 | |
| Lsi04g01508 | CCT,ECH | 228 | 476 | Core Cell Cycle Gene Families | AT1G15570 | 52.6 | 1.2e-70 | 264.2 | |
| Lsi08g00456 | . | 218 | 497 | Core Cell Cycle Gene Families | AT1G80370 | 55.4 | 1.0e-80 | 297.7 | |
| Lsi04g01508 | CCT,ECH | 231 | 484 | Core Cell Cycle Gene Families | AT1G80370 | 51.6 | 1.2e-68 | 257.7 | |
| Lsi08g01505 | CCT,ECH | 5 | 362 | Core Cell Cycle Gene Families | AT5G43080 | 57.7 | 1.3e-109 | 393.3 | |
| Lsi04g01508 | CCT,ECH | 231 | 487 | Core Cell Cycle Gene Families | AT5G43080 | 63.4 | 3.0e-93 | 339.0 | |
| Lsi08g00456 | . | 219 | 499 | Core Cell Cycle Gene Families | AT5G43080 | 51.2 | 1.4e-79 | 293.5 | |
| Lsi08g01505 | CCT,ECH | 1 | 362 | Core Cell Cycle Gene Families | AT1G47210 | 57.2 | 2.3e-115 | 412.5 | |
| Lsi04g01508 | CCT,ECH | 226 | 487 | Core Cell Cycle Gene Families | AT1G47210 | 62.2 | 2.2e-94 | 342.8 | |
| Lsi08g01505 | CCT,ECH | 78 | 362 | Core Cell Cycle Gene Families | AT1G47220 | 53.9 | 6.2e-85 | 311.2 | |
| Lsi04g01508 | CCT,ECH | 226 | 488 | Core Cell Cycle Gene Families | AT1G47220 | 57.4 | 6.4e-82 | 301.2 | |
| Lsi08g01505 | CCT,ECH | 1 | 362 | Core Cell Cycle Gene Families | AT1G47230 | 53.9 | 1.5e-106 | 383.3 | |
| Lsi04g01508 | CCT,ECH | 230 | 487 | Core Cell Cycle Gene Families | AT1G47230 | 66.0 | 3.0e-96 | 349.0 | |
| Lsi03g00554 | . | 66 | 351 | Core Cell Cycle Gene Families | AT1G47230 | 54.5 | 1.2e-79 | 293.9 | |
| Lsi08g00456 | . | 220 | 501 | Core Cell Cycle Gene Families | AT1G47230 | 50.2 | 2.7e-76 | 282.7 | |
| Lsi01g00535 | . | 170 | 338 | Core Cell Cycle Gene Families | AT5G06150 | 53.8 | 1.9e-44 | 176.8 | |
| Lsi01g00535 | . | 171 | 403 | Core Cell Cycle Gene Families | AT3G11520 | 51.1 | 3.1e-59 | 226.1 | |
| Lsi10g01118 | . | 114 | 529 | Core Cell Cycle Gene Families | AT2G26760 | 50.1 | 1.4e-99 | 360.1 | |
| Lsi01g00535 | . | 8 | 446 | Core Cell Cycle Gene Families | AT2G17620 | 59.9 | 4.6e-128 | 454.9 | |
| Lsi01g00535 | . | 5 | 403 | Core Cell Cycle Gene Families | AT4G35620 | 58.2 | 4.8e-105 | 378.3 | |
| Lsi04g01804 | . | 1 | 406 | Core Cell Cycle Gene Families | AT1G20610 | 59.2 | 1.1e-126 | 450.3 | |
| Lsi01g00535 | . | 1 | 446 | Core Cell Cycle Gene Families | AT1G20610 | 56.9 | 2.6e-123 | 439.1 | |
| Lsi04g01804 | . | 1 | 303 | Core Cell Cycle Gene Families | AT1G76310 | 56.8 | 4.9e-85 | 311.6 | |
| Lsi01g00535 | . | 1 | 336 | Core Cell Cycle Gene Families | AT1G76310 | 53.5 | 7.9e-83 | 304.3 | |
| Lsi02g01730 | . | 1 | 329 | Core Cell Cycle Gene Families | AT1G70210 | 65.0 | 3.6e-112 | 401.7 | |
| Lsi05g00231 | . | 5 | 335 | Core Cell Cycle Gene Families | AT4G34160 | 51.3 | 9.7e-82 | 300.8 | |
| Lsi08g01495 | CCT,ECH | 47 | 322 | Core Cell Cycle Gene Families | AT4G34160 | 51.2 | 2.7e-68 | 256.1 | |
| Lsi03g00524 | . | 61 | 303 | Core Cell Cycle Gene Families | AT4G34160 | 50.6 | 2.5e-61 | 233.0 | |
| Lsi01g00802 | . | 56 | 301 | Core Cell Cycle Gene Families | AT5G65420 | 53.4 | 1.9e-63 | 239.6 | |
| Lsi08g01007 | . | 65 | 264 | Core Cell Cycle Gene Families | AT5G65420 | 55.9 | 5.7e-60 | 228.0 | |
| Lsi08g01007 | . | 60 | 238 | Core Cell Cycle Gene Families | AT5G10440 | 53.9 | 1.2e-50 | 196.8 | |
| Lsi01g00802 | . | 54 | 259 | Core Cell Cycle Gene Families | AT5G10440 | 51.7 | 3.8e-49 | 191.8 | |
| Lsi01g01011 | . | 24 | 236 | Core Cell Cycle Gene Families | AT5G27620 | 52.7 | 1.7e-65 | 246.5 | |
| Lsi04g00009 | . | 4 | 844 | Core Cell Cycle Gene Families | AT3G12280 | 66.7 | 0.0e+00 | 1153.3 | |
| Lsi02g02376 | . | 2 | 490 | Core Cell Cycle Gene Families | AT1G02970 | 59.6 | 5.8e-159 | 557.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0005644 | 3 | 1 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 39 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 83301 | PF01676 | Metalloenzyme | 6.70E-98 | CL0088 | Lsi | PK |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lsi01g01645 | Lsi_Chr01 | FPKM | 10.662651 | 10.659328 | 16.525454 | 17.671913 | 7.71203 | 6.876944 | 7.684058 | 16.850826 | 16.565445 | 18.31053 |