Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01649 ATGGCTGCTTACGCTTTGCTCGGTGATTCCACCGGCCGTGTTAATGGCGGTTTCGATGATAGTCCTTTGACCAGCGATTCTACGAATAGCAACGGTAGTGACGAACATATTCATCCACAGATTGTTCAAGTTCAAGTTCAGGTTGCTCAACCGCGACTGCCGGTTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATCGAAGGCGGCGGTGGCGGTGGCGGTGGAGGAGCTACTGCCGCTGTTCATCCCCGGTTTTGCCGCCGGAGTTTAGCTTCTGATCGTCCTTTTGCAGGTGGAGAAAATAAGGCGAATGCGAATTATTGTTCTTCTTCAAACCCTAACCATGGCGGCAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGTATCTTCCACTACCTCCAACAATAATCTTCTCGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGGTTGCCTTTGTTCCCACCGGAATCAAATCACCACCACAAGTTAAATACTCGCAATAATCCTTTTCCCCTTCCTAATCCATCTCAGGTTCTTCTTCATAATCCTCCCACTACTGCAACTACCTCCATTATCGCCGCCGCTTCTTCTCCCATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGACTTAATACATAGTTCCACCGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCTTGTAACCCCAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCCGCTGAGGATCATCGAGTGAGGAAATCCCCCTTACCGTTGCCGGCGCCGGTGGCTGGGCTGGGGTTGCAGCAGAGACAGTTCAACCAAGAGCAGCACGAGCAAGAACAGGATTGTTCTGGATTGAAGCTTAATCTTGATTCTTCTTCTCTGCATAATCTTCCTAATTTTCCCTCTCAACCGCCGTTTCATGAGCCGTATCTTCAATGGGGAGCAACCCCTCCGCCGGTCCCTACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGGCTCCCTGGTCACCATCAACTTAATCTCTCTTCTGTTACACCGTCGTCGCTTGTTTCTCTAAACCATGTCCCTTCAAAGCCACAAGCAGAACAACAGAACTCCTGTCCGGTCAATGCAAAGGCGGCGGCGGCGGCACAGCCAGCTCCAGCGCCACCGCCGTCGACGAGTAATAACCCTTCAGCAACTGCTTTGCTGATCAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGATTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCCGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTATCAACACCCTTTGGCACATCGGCGCAGAGGGTGGCGGCATATTTCTCAGAAGCAATGTCGGCAAGGCTTGTAAGCTCTTGTTTAGGCATATATGCAGCTCTGCCACCGTCGTTGGTGCCTCATACACACAGCCAGAAAATAGCCTCAGCCTTCCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATACAAGAAGCTTTCGAAAGAGAAGAGAGAGTTCACATTATAGATCTGGACATCATGCAAGGCCTTCAATGGCCTGGCTTGTTCCACATCTTGGCGTCTAGACCCGGCGGGCCGCCGTACGTCCGCCTTACAGGGCTGGGGACTTCTCAGGAGGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCCGAGAAGCTTGGCCTTCCCTTTGATTTCTTTCCAGTGGCTGATAAAATTGGCAATTTAGACTTGGAGAGGCTCAATGTGAGCAAAAGGGAAGCCGTTGCCGTCCATTGGATGCAGCATTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCCCCAAAAGTAGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGTTCTTTCTTGGGGAGATTCGTAGAGGCTATTCATTACTATTCAGCACTGTTTGACTCATTGGGTGTGAGCTATGGCGAAGAGAGTGAAGAGAGACACTTAGTTGAGCAGCAACTGTTATCAAGGGAGATCAGAAACGTTCTCGCCGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAGAAGCTGCAGCAATCTGGGTTTAAGGGCATTTCCCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTTCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGGACTCTCAAACTTGGGTGGAAGGATCTTTGTTTGCTTACAGCCTCGGCTTGGAAGCCGCCGTTTCATCATCATGCTGCGGCGGCTGCTGCACCGGCAGCCACCAACAACCACATTCCCCGGTACTGA 2583 50.29 MAAYALLGDSTGRVNGGFDDSPLTSDSTNSNGSDEHIHPQIVQVQVQVAQPRLPVGKMVRKRIASEMEIEGGGGGGGGGATAAVHPRFCRRSLASDRPFAGGENKANANYCSSSNPNHGGNHSTVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPESNHHHKLNTRNNPFPLPNPSQVLLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFAAEDHRVRKSPLPLPAPVAGLGLQQRQFNQEQHEQEQDCSGLKLNLDSSSLHNLPNFPSQPPFHEPYLQWGATPPPVPTPSAAAAGEDALQRLPGHHQLNLSSVTPSSLVSLNHVPSKPQAEQQNSCPVNAKAAAAAQPAPAPPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAPAATNNHIPRY 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15022769 15026442 + Lsi01G016490.1 Lsi01g01649 654307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01649 860 MobiDBLite consensus disorder prediction 17 35 - -
Lsi01g01649 860 MobiDBLite consensus disorder prediction 413 452 - -
Lsi01g01649 860 MobiDBLite consensus disorder prediction 14 35 - -
Lsi01g01649 860 MobiDBLite consensus disorder prediction 413 431 - -
Lsi01g01649 860 MobiDBLite consensus disorder prediction 351 383 - -
Lsi01g01649 860 Pfam GRAS domain family 478 837 IPR005202 -
Lsi01g01649 860 MobiDBLite consensus disorder prediction 138 164 - -
Lsi01g01649 860 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 839 IPR005202 -
Lsi01g01649 860 ProSiteProfiles GRAS family profile. 468 837 IPR005202 -
Lsi01g01649 860 PANTHER PROTEIN SCARECROW 155 839 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01649 Lsi-Chr1:15022769 Lsi07g00800 Lsi-Chr7:8898817 5.24E-161 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24695 PF03514 GRAS 8.00E-127 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01649 - - bhj:120074183 1500.72