Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01651 ATGGCAGAATCAGATCAAGATCAAGGTGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTACAAATCATGAAAGACCCCGTCACGGTCGCCTCTGGCATAACCTACGACCGCGAAAATATCGAGAAATGGTTGTTTTCCGACAAACACAAGACGTGTCCTGTCTCGCAGGTCGTGTTGTCAAACTTCGATACCACTCCCAACCATACTTTAAGACGAGTCATTCAAGCTTGGTGCATCGTCAACGCTTGTAGCGGTGTCGAGAGGATACCGACGCCGAAGCCCCCGGTTGACCAGAAGCAAGTTGTTCGGATTCTCGCTGATGCTAAGTTATCTCCTTTTGCTCAACAGAATTGTCTCCGTCGTCTTCGATCGATGGCTGCGGCGAATGAAACTAATAAACGTTGTATGGAATCTGCTGGAGTTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGGTATACTACAAAACTCAAACAAATTTAAATCCTCTCTAATTTTTATTCATGTTTTCATAATTGAAGCTGAGTTTAAAAACTAG 576 45.14 MAESDQDQGVVDPPPFFLCPISLQIMKDPVTVASGITYDRENIEKWLFSDKHKTCPVSQVVLSNFDTTPNHTLRRVIQAWCIVNACSGVERIPTPKPPVDQKQVVRILADAKLSPFAQQNCLRRLRSMAAANETNKRCMESAGVVEFLAGLVCSSTTNVESGFEGILQNSNKFKSSLIFIHVFIIEAEFKN 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15058215 15058790 + Lsi01G016510.1 Lsi01g01651 654309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01651 191 CDD RING-Ubox_PUB 17 59 IPR045210 -
Lsi01g01651 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lsi01g01651 191 Pfam U-box domain 14 81 IPR003613 GO:0004842|GO:0016567
Lsi01g01651 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 11 172 - -
Lsi01g01651 191 SUPERFAMILY RING/U-box 4 87 - -
Lsi01g01651 191 SMART Ubox_2 16 80 IPR003613 GO:0004842|GO:0016567
Lsi01g01651 191 PANTHER WDSAM1 PROTEIN 11 172 IPR045185 GO:0061630
Lsi01g01651 191 ProSiteProfiles U-box domain profile. 12 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01651 Lsi-Chr1:15058215 Lsi10g01136 Lsi-Chr10:15647612 8.43E-50 dispersed
Lsi01g01651 Lsi-Chr1:15058215 Lsi03g01816 Lsi-Chr3:29647859 1.79E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01651 - - cmo:103485961 290.426