Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01658 ATGGCTCGAAAATCTCCTTCAGTGTTGACCTATTTGCAGCTGCACCTCCGATTTCTCTTCTTCCGGCGTCAATTTTTTTTGTTGATTCCGGCCAATTACTGCTCCTTCTTGTTCGATTTCCAGAGATTAACCATGATTGATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTACTCGACAGCCGGTGTTTATGGCCTTCCGCTTCACCCGCTTCTTATCACTACTACTCTTGTCTTCGTTCTTGTTTTCGTTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGCTACTGCTGCTTTCTATGCTGCCGGCGTTGGTCCATCCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCTATCAAGGAGGTGATGCCTATACAATACAAGCACATGCTTGGTGGACCTTCTCTGAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGGGGTCCCTCCAGCCCAGTTATTAAAACATGGTTGCTGGCAATGGCCACTGTAGCATTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGATGGGCATATCTAAACAACAGGCATGATACATGGGAGCAGTTGTACAATCATCTTCCCACCACCACCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGAAATCGGAACCTTCTGATTTACCTATTTTTCTAGACATAGGATTAGAAAACGATGGAGAGCTGGATCCGACTCCCGAAGCACCGCAGTCCTTGAAGGCTCCCGCTGCCTCCAATTCCACCGGAAACGGTCAGATCCGTTACCGATCTCCGTCTTCCGCCGAGCTTCTTGAAGGACAACCCGCTTCTCTTCCACTTCAAGATCAACAGAAGCTACTTCAGTTGGAATTTGACAAGATGCATAAGCGTTCCGGGAAGCAACAGTCGGAATCGTTGTCTAACAAGATCTATAGATTTAGAGGGGTGTTATTGCTTACCTCTCTTTCTCTTTTCTTAATCGCCTTTGTTCTTTATCTCATGCCGGCCCGTGAGGATTACTCCTTCAACCACCGCAAAGTTTCCCCTGATCACAGGTCTTCTTCTTCTTCCAAGACTTCTTTTGCTGTCATTTTTGATGCTGGTAGCTCTGGGAGTCGCGTCCATGTCTTTTGCTTCGATCATAATCTCGATCTCCTCCCCGTTGGCAAGGATATCGAACTTTTCGAACAACTTAAACCAGGACTGAGTGCATATGCTGACAGCCCCAAGGATGCTGCAGCATCTCTAATTTCCCTCTTGGACAAAGCTCAAGACGTGGTTCCAAAAGGGTTGCGGCCAATGACCCCTGTTAGAGTTGGGGCAACTGCTGGCTTGAGGGCCCTGAAAGGTGATGCATCTGATAGAATTTTACAGGCGGTTAGGGATCTCCTGAGAGACAAAAGTGACCTCAGGTTGGAGGGAGAAGATGCCGTCACTGTGATTGATGGAACTCAAGAAGGTTCTTACCTTTGGAATAGGATCATTGAACTTGGCAGCACAATGGAATATGAAGAGGTTGTCGATAAACTACATATGAATTTTAAGCATCATAACAGCATTGAGCAGAATTTGAGACGGAAATATGTTCAATTGGAGATTGTGACGTTAAACTATCTGCTTGGGAACTTGGGTAAGAAATATTCGGATACAGTTGGAGTTGTAGATCTTGGGGGAGGATCTGTTCAAATGGCATATGCTATCTCAGAAAAGGATGCTGCTCGATTATCAGATGTAGAGGGTGCATACGTCAAAAAGATGTATCTGAAGGGAGCAACTTATTATCTCTATGTTCACAGTTATTTGCACTATGGGTTACTAGCTGCTCGAGCAGAGGTTTTGAGTGTCTCTGAAGATTCTAACAATGATTGCATTTTATCTGGCTATGAAGGAGAATACCATTACGGAGGAAAGGACTACAAAGCATCAGCCTCTTCATCAGGGTCTAGCTTGAATGGATGCAGGAGTACAGTTTTGAAGGCCCTCAAGGTTAATGAATCCACGTGTACTCACATGAAGTGCACTTTTGGTGGTGTTTGGAATGGCGGAGGAGGAGACGGCCAGAAGAATCTCTTCGTTGCTTCATTTTTCTTTGACAGGGCAGCTGAGGCTGGTTTTGCTGACCCCAATAAGCCGGTTGCTAAAGTTCGCCCCGCAGACTTCAATGATGCAGCGAAACAGGCATGCCAAATCAAAGTCGAGGATGCCAGTACATATCCGAATGTCGAGAAGGATAACCTGCCGTATTTGTGTATGGATCTTGTGTATCAGTACACACTACTCGTAGATGGATTCGGGCTGGATCCCTGGCAAGAGATCACATTGGTGAAGAAGGTTAAATATCAGAACTCCTTGGTTGAAGCAGCATGGCCTCTAGGCAGTGCCATCGAAGCTGTCTCGTCGTTAGCCTAA 2574 46.39 MARKSPSVLTYLQLHLRFLFFRRQFFLLIPANYCSFLFDFQRLTMIDAIKAAIGDAVLTSMWIFCASSLGVLTSVLYSTAGVYGLPLHPLLITTTLVFVLVFVFNIIGAALGGASFNPTATAAFYAAGVGPSSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYLNNRHDTWEQLYNHLPTTTPSPSQAEESLKSEPSDLPIFLDIGLENDGELDPTPEAPQSLKAPAASNSTGNGQIRYRSPSSAELLEGQPASLPLQDQQKLLQLEFDKMHKRSGKQQSESLSNKIYRFRGVLLLTSLSLFLIAFVLYLMPAREDYSFNHRKVSPDHRSSSSSKTSFAVIFDAGSSGSRVHVFCFDHNLDLLPVGKDIELFEQLKPGLSAYADSPKDAAASLISLLDKAQDVVPKGLRPMTPVRVGATAGLRALKGDASDRILQAVRDLLRDKSDLRLEGEDAVTVIDGTQEGSYLWNRIIELGSTMEYEEVVDKLHMNFKHHNSIEQNLRRKYVQLEIVTLNYLLGNLGKKYSDTVGVVDLGGGSVQMAYAISEKDAARLSDVEGAYVKKMYLKGATYYLYVHSYLHYGLLAARAEVLSVSEDSNNDCILSGYEGEYHYGGKDYKASASSSGSSLNGCRSTVLKALKVNESTCTHMKCTFGGVWNGGGGDGQKNLFVASFFFDRAAEAGFADPNKPVAKVRPADFNDAAKQACQIKVEDASTYPNVEKDNLPYLCMDLVYQYTLLVDGFGLDPWQEITLVKKVKYQNSLVEAAWPLGSAIEAVSSLA 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15143731 15157294 - Lsi01G016580.1 Lsi01g01658 654316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01658 857 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 PRINTS Major intrinsic protein family signature 50 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 SUPERFAMILY Aquaporin-like 41 246 IPR023271 -
Lsi01g01658 857 MobiDBLite consensus disorder prediction 301 317 - -
Lsi01g01658 857 PANTHER APYRASE-LIKE PROTEIN 350 550 - -
Lsi01g01658 857 Gene3D Glycerol uptake facilitator protein. 41 261 IPR023271 -
Lsi01g01658 857 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 350 550 IPR000407 GO:0016787
Lsi01g01658 857 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 588 855 IPR000407 GO:0016787
Lsi01g01658 857 MobiDBLite consensus disorder prediction 291 317 - -
Lsi01g01658 857 Gene3D Exopolyphosphatase. Domain 2 586 834 - -
Lsi01g01658 857 Pfam Major intrinsic protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01658 857 Gene3D - 412 563 - -
Lsi01g01658 857 PANTHER APYRASE-LIKE PROTEIN 588 855 - -
Lsi01g01658 857 Pfam GDA1/CD39 (nucleoside phosphatase) family 411 548 IPR000407 GO:0016787
Lsi01g01658 857 Pfam GDA1/CD39 (nucleoside phosphatase) family 589 855 IPR000407 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01658 Lsi-Chr1:15143731 Lsi06g00717 Lsi-Chr6:11923981 1.04E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01658 K14641 - csv:101220305 849.736