Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01659 ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGATCTCGAAGCCGGTTTAGAAATGCCATCGTCCGTTGCCGGCGACAACGGCGACATGGGTCTTTTTCTCGAAGAAGCCGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTACTTAAACTCCAACAAGCTAACGAAGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATCGCTTCGTAATACAATCAACGTCGACATCGTCACCGTTCTGAAAAAGGCGCGATCGATCCGATCTCAGCTCGAGGAAATGGACCGCGCCAACGCTGCAAAAAAACGTCTCTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACGAGAATCGCAGTGACGAACGGGCTACGAAAGAAGCTAAAGGAATTAATGATGGAGTTTCAAAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGACGGTACTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTGATAGAGAAGATAATATCGAATGGAGGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGAGAGGGAAGGTAGCGGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGTTAGAGCTACATCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTGAGAGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAAGAACAGTAGAAAGTGTATGTGTTTTGGGATTTTGCTTTTGCTTTTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA 930 46.45 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSVAGDNGDMGLFLEEAEKVKMEMGSIREILLKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQKNSRKCMCFGILLLLLIILVVVIPIAVSFGSS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15160644 15161782 + Lsi01G016590.1 Lsi01g01659 654317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01659 309 SMART tSNARE_6 206 273 IPR000727 -
Lsi01g01659 309 CDD SNARE_syntaxin1-like 210 272 - -
Lsi01g01659 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Lsi01g01659 309 Gene3D - 206 307 - -
Lsi01g01659 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020|GO:0016192
Lsi01g01659 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi01g01659 309 Gene3D - 38 166 - -
Lsi01g01659 309 CDD SynN 42 198 IPR006011 GO:0016020
Lsi01g01659 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020
Lsi01g01659 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Lsi01g01659 309 Pfam SNARE domain 248 299 IPR000727 -
Lsi01g01659 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Lsi01g01659 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Lsi01g01659 309 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01659 Lsi-Chr1:15160644 Lsi02g00706 Lsi-Chr2:6322594 1.05E-98 dispersed
Lsi01g01659 Lsi-Chr1:15160644 Lsi01g01181 Lsi-Chr1:10035743 2.50E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01659 K08486 - csv:101220775 558.525