Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01690 ATGGCGACGAATTTCTGGTCCTTGGCATGTATTCGGAGTCAGAGCAGCAGCAATCTCTCTCCTCGGCCTCATTATCCGTCTATGCCGAAATACCCAGCTGGGGTTTTGCTGCCGGAGAACAGCTTGCCGGTGATCGAGTCCACGGCCTTCTTCTCCGTCACCGGAATGACCTGTTCTGCATGTGCTGGCTCTGTCGAGAAGGCGATCAAACGCCTCCCTGGGATTCGTGAAGCCGTTGTTGGTGTTTTGAATGCCAAAGCTCGAGTCCAGTTTTACCCTAGCTTCGTTAATGTGGATCAAATATGTGAAGCAATTAATGATGCAGGCTTTGAAGCAAGTGTAGTCAATGATGATATGATTGAAAGATGTCGAATTCGTGTAATTGGAATGACTTGCACTTCGTGTTCCACAACTTTGGAATCTACATTACAAGCAATTCATGGAGTTCAAAATGCCCAAGTTGCATTAGCCACGGAAGAAGCAGAAATTTGTTATAATCCAAGAATTTTGAACTACAATCAACTTCTTCAAGCCATTGAAGATTCTGGATTTGAAGCTTTACTTATTAGCACAGAAGAAGATGTGAGCAAGATACAGCTCCATGTTGATGGAGTGAGATCTGAGAATTCAATGAGATTGATTGGGAGCTCTCTGGAAGCACTTCCTGGGGTTTTAGGTGTTGATATTGACCCTGCACTCAGCAAACTTTCGTTGTCTTACAAGCCAAATGTCACGGGACCTCGGAATGTAATCCAAGTGATTGAATCAACTGGATCGGGTCGATTTAAGGCAACAATATTTCCTGAAGGAGAGGGCAGAGAAGCCTATAAAAAGGAGGAAATTAAGCAATATTACAGATCATTCTTATGGAGTCTGATATTTACAATTCCAGTATTTCTGAGCTCCATGGTCTTCACTTATATACCTGGTATTAAGGATGGGCTAGATACAAAAGTTGTCAATATGATGACTGTTGGAGAGCTGCTGAGGTGGGTGTTATCAACTCCTGTACAGTTCATTATTGGAAGGCGATTCTATACTGGATCTTATAAAGCATTGCGGCATGGTTCTGCGAATATGGATGTTTTGATTGCTCTGGGAACAAATGCAGCATACTTTTATTCAGTCTACATGGTCCTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACAGACTTCTTTGAGACCAGTTCCATGCTTATTTCATTCATTCTCCTCGGAAAATATCTTGAGGTTTTGGCGAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCAACGTTGCTTACTTTTGATAATGATGGAAATATCATTAGGGAAGAAGAAATTGACAGTCGACTGATACAAAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAAGTTGCTTCAGATGGAATTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAAAGAAGGGATGATACTGTGATTGGAGGCACCTTGAACGAGAATGGGGTGCTACATGTGAGGGCAACACATGTTGGATCTGAAAGTGCTCTTTCACAGATTGTGCGACTTGTGGAATCAGCTCAGATGGCCAAGGCTCCAGTCCAGAAAATTGCAGATCGCATCTCTAAGGTTTTTGTGCCAATGGTAATAGTCCTTTCATTGACAACATGGCTTGTCTGGTTTCTCACTGGGAAGTATGGTGGCTACCCAAGGACTTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCTCTCCAGTTTGGTATCTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCTGTCATGGTTGGAACAGGAGTTGGGGCGTCAAAAGTCGGGAAGCCAGTTGTGGTGAACACTAAGCTACTTAAAAATATGGCTCTGAAAGAATTCTGTGTACTAGTCGCAGCCACTGAGGTAAACAGCGAGCATCCACTGGCTAAAGCCGTTGTCGAATATGCTCAAAAGTTCAAAGAAGAAGATGATAACCAAACTTGGCCTGAAGCACAAGACTTTATCTCCATTACTGGACATGGAGTTAAGGCCATCGTTCAAAACAAAGAAGTACTTGCGGGGAACAAGAGTCTTATGTTAGATCATAACATCTCCATACCTGTTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATTGATAGGAAATTGACAGGGGTTCTTGCCATATCTGATCCACTAAAACCGAGTGCTCGCGACGTCATTTCCATACTCAAGGCCATGAAAGTTAAATCCATCATGGTGACAGGTGATAATTGGGGAACAGCAAAGTCCATAGCCAGTGAGGTTGGGATTGATGATGTAATTGCAGAAGCTAAACCTGACCAGAAAGCAGATGAAGTGAAGAAATTACAGTCATTGGGTCATACGGTGGCCATGGTCGGAGACGGGATCAACGACTCACCAGCACTAGTGGCTGCAGATGTTGGAATGGCAATTGGTGCAGGCACAGACATTGCCATTGAGGCAGCTGACATAGTTCTCATGAAAAGCAACTTGGAGGATGTCATAACAGCCATCGACCTTTCGAGGAAAACGTTTTCCAGAATCCGCCTGAACTACATTTGGGCACTCGGTTACAATCTCCTCGGCATCCCTATAGCAGCTGGAGTCCTATTCCCATCAACTCGGTTTCGATTACCGCCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCTGTTAGTGTTGTTTGCAGTTCTCTCCTGCTCAAGTATTACAAAAGACCCAAGAAGCTTGATAGCCTTGAGATACAAGGCATTAGAGTTGAGTGA 2862 43.85 MATNFWSLACIRSQSSSNLSPRPHYPSMPKYPAGVLLPENSLPVIESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVGVLNAKARVQFYPSFVNVDQICEAINDAGFEASVVNDDMIERCRIRVIGMTCTSCSTTLESTLQAIHGVQNAQVALATEEAEICYNPRILNYNQLLQAIEDSGFEALLISTEEDVSKIQLHVDGVRSENSMRLIGSSLEALPGVLGVDIDPALSKLSLSYKPNVTGPRNVIQVIESTGSGRFKATIFPEGEGREAYKKEEIKQYYRSFLWSLIFTIPVFLSSMVFTYIPGIKDGLDTKVVNMMTVGELLRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETATLLTFDNDGNIIREEEIDSRLIQKNDVIKVIPGAKVASDGIVVWGQSHVNESMITGEAKPVAKRRDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKVFVPMVIVLSLTTWLVWFLTGKYGGYPRTWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASKVGKPVVVNTKLLKNMALKEFCVLVAATEVNSEHPLAKAVVEYAQKFKEEDDNQTWPEAQDFISITGHGVKAIVQNKEVLAGNKSLMLDHNISIPVEAEEILKEIEEMAQTGILVSIDRKLTGVLAISDPLKPSARDVISILKAMKVKSIMVTGDNWGTAKSIASEVGIDDVIAEAKPDQKADEVKKLQSLGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKYYKRPKKLDSLEIQGIRVE 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15509974 15515773 + Lsi01G016900.1 Lsi01g01690 654348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01690 953 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Lsi01g01690 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 649 906 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g01690 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g01690 953 SUPERFAMILY HMA, heavy metal-associated domain 122 192 IPR036163 GO:0046872
Lsi01g01690 953 Gene3D - 44 115 - -
Lsi01g01690 953 Gene3D - 736 890 IPR023214 -
Lsi01g01690 953 SUPERFAMILY HAD-like 724 930 IPR036412 -
Lsi01g01690 953 ProSiteProfiles Heavy-metal-associated domain profile. 197 258 IPR006121 GO:0046872
Lsi01g01690 953 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 630 759 IPR023299 GO:0000166
Lsi01g01690 953 CDD HMA 51 113 IPR006121 GO:0046872
Lsi01g01690 953 Pfam haloacid dehalogenase-like hydrolase 642 838 - -
Lsi01g01690 953 PANTHER ATP7, ISOFORM B 628 944 - -
Lsi01g01690 953 PANTHER ATP7, ISOFORM B 1 627 - -
Lsi01g01690 953 CDD HMA 199 265 IPR006121 GO:0046872
Lsi01g01690 953 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Lsi01g01690 953 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Lsi01g01690 953 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Lsi01g01690 953 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Lsi01g01690 953 Pfam E1-E2 ATPase 428 626 - -
Lsi01g01690 953 PRINTS P-type cation-transporting ATPase superfamily signature 771 781 - -
Lsi01g01690 953 PRINTS P-type cation-transporting ATPase superfamily signature 749 760 - -
Lsi01g01690 953 PRINTS P-type cation-transporting ATPase superfamily signature 824 843 - -
Lsi01g01690 953 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Lsi01g01690 953 PRINTS P-type cation-transporting ATPase superfamily signature 847 859 - -
Lsi01g01690 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 892 IPR023298 -
Lsi01g01690 953 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Lsi01g01690 953 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Lsi01g01690 953 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Lsi01g01690 953 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Lsi01g01690 953 CDD P-type_ATPase_Cu-like 286 920 - -
Lsi01g01690 953 SUPERFAMILY HMA, heavy metal-associated domain 192 259 IPR036163 GO:0046872
Lsi01g01690 953 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Lsi01g01690 953 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 628 944 - -
Lsi01g01690 953 Gene3D - 415 537 - -
Lsi01g01690 953 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 627 - -
Lsi01g01690 953 CDD HMA 125 186 IPR006121 GO:0046872
Lsi01g01690 953 Gene3D - 628 707 IPR023299 GO:0000166
Lsi01g01690 953 Gene3D - 120 193 - -
Lsi01g01690 953 Gene3D - 195 268 - -
Lsi01g01690 953 SUPERFAMILY HMA, heavy metal-associated domain 48 117 IPR036163 GO:0046872
Lsi01g01690 953 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Lsi01g01690 953 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01690 Lsi-Chr1:15509974 Lsi09g00270 Lsi-Chr9:2813136 0 dispersed
Lsi01g01690 Lsi-Chr1:15509974 Lsi06g01195 Lsi-Chr6:22295824 6.69E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01690 K17686 - csv:101218801 1739.93