Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01707 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCTTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCTCTTATCCGGCAGATGTTCGGAGCTAGTGCGGAGAAGGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCTAGCGACGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGACTCCAAAGGGAAAAAGGGACATAAAGGTGTTGATTCTTCCCCATCCCCTCCAACCACATTTATAATTTTGGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAGCACTCTCTTAGGAGAACTATGGAGAAATATAGCTCATACTGTAGGTTAATACTCTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCCGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTACGTCTCTCATGTTCGTGGGAAGATATATGAGCTACTGGTTAATTGTATCCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACTTTCGGCTAA 1074 43.39 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKKGHKGVDSSPSPPTTFIILVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASDIMKEQSPKRYVSHVRGKIYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15755241 15761480 - Lsi01G017070.1 Lsi01g01707 654365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01707 357 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 349 - -
Lsi01g01707 357 Gene3D - 192 250 - -
Lsi01g01707 357 SUPERFAMILY post-AAA+ oligomerization domain-like 253 349 IPR008921 GO:0003677|GO:0006260
Lsi01g01707 357 Pfam DNA polymerase III, delta subunit 18 189 - -
Lsi01g01707 357 CDD AAA 19 183 - -
Lsi01g01707 357 Gene3D - 254 348 - -
Lsi01g01707 357 Gene3D - 1 191 IPR027417 -
Lsi01g01707 357 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 349 - -
Lsi01g01707 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 239 IPR027417 -
Lsi01g01707 357 SMART AAA_5 33 194 IPR003593 -
Lsi01g01707 357 CDD HLD_clamp_RFC 191 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01707 Lsi-Chr1:15755241 Lsi05g01921 Lsi-Chr5:26409497 1.33E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01707 K10756 - csv:101221072 618.616