Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01736 ATGATGGACTTCTTACAGTCTCTGGATCCCCAAATCCTTCTGGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTCTCTATGTATTATCCTCGTCCAAGAAAAGCAAATACGGAGGTTGCTTGGATCCAGATGTTTTCAAGGAGTTCAAACTTATCAAGCGTCTGCAGTTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACAAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGACGGCGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGGTGATGCTCCTCGGTCTTGATCAGTTTCTCTATTTGCTGCAACCTCACGCCGCCACCGCAGCCCCTCCATCTCTCCGTCGCTCGCCGTCGAGGTTCACTGGTGCAATGGGAAGGAAGAAAACAGATGAAGGTGGTGGAAACGCCAAAGTCAAGCCTGGTAAAGATGTTTCTGGGAAGAGAGAGAAGCTTTCGGTGTCAGAAATGCTTGCCAGTATGGATCAGAAATCAGATAAACCAAAAAAGGGATCTTCATCTTTGAGTGGTGGTGCTAAACCTCAAGCAAAGGCACCAAAAAATGTTGCAGCTTACACTGATGGCATTGATCTCCCTCCCTCAGATGATGAGGAAGAAGAAATTGTGTCTGATGGGGAGCAACAGAGTACCAGTTCCCAGAAACGGCTACCCTGGCAGGACAGGGCTGAGGTGAAGCCTCTAGAGGTGGCTGTAAGTGACAAAGAGTTGAAAAAACGAGAGAGGAAGGATATGTTTGCTGCCCATGCTGCAGAACAGGCCAGACAAGAAGCTCTAAAAGATGACCATGATGCTTTCACTGTTGTAATTGGTAGCCGAGCTTCGGTTCTTGATGGTAATGATGAAGCTGATGCAAATGTCAAAGACATTACAATCGATAATTTCTCTGTTTCAGCCAGAGGGAAAGAGCTTTTGAAAAATGCATCAGTGAAGATATCTCACGGGAAGAGGTATGGTTTAGTTGGGCCTAATGGTATGGGAAAGTCCACATTATTAAAGCTCCTTGCTTGGAGGAAGATACCGGTTCCTAAAAATATTGATGTCCTTTTGGTTGAACAAGAGGTGGTTGGTGATGATAGAACGGCACTTCAAGCAGTTGTTTCTGCTAATGAGGAGCTGGTCAAGCTTCGACAAGAAGTTGCTGATTTGCAGAATTCTGATGGTGGTCAAGATGAAAATGATGATGATGATGCAGGAGAGAGGCTTGCTGAGTTATATGAAAAGCTGCAGCTCTTGGGATCAGATGCAGCTGAGGCTCAAGCTTCCAAAATTCTTGCTGGACTGGGTTTTACCAAGGATATGCAAGCACGACCCACCCGTTCATTTAGTGGTGGATGGCGGATGAGGATTTCATTGGCTCGGGCTCTTTTTGTTCAGCCAACACTTCTATTACTAGATGAACCTACAAATCATCTAGACCTTCGGGCTGTTCTCTGGTTGGAGGAGTACCTCTGTCGATGGAAGAAAACTCTTGTTGTTGTGTCACACGATCGAGATTTCCTCAACAGTGTTTGCAACGAAATTATTCATCTTCATGACTTAAGGCTTCATTTTTATCGTGGAAATTTTGACGATTTTGAAAGTGGGTATGAGCAGCGTCGGAAAGAAATGAACAAGAAGTTTGAGATATATGATAAGCAGGTGAAAGCAGCTAAGAGGTCTGGAAGCAGGGCCCAACAAGAGAAGGTGAAAGACCGAGCAAAGTTTGCTGCTGCTAAGGAAGCCTCAAAGAACAAGTCCAAGGGAAAGGTTGATGAGGATGATCCCCTGCCAGAGGCCCCCAGAAAGTGGAGAGATTACAGTGTAGAATTCCACTTCCCTGAACCCACTGAGCTCACCCCACCATTATTACAGTTGATTGAAGTAAGCTTTAGCTATCCAAATAGGGAAGATTTTAGACTTTCTGATGTTGATGTGGGTATTGATATGGGAACGCGGGTTGCTATAGTTGGGCCCAATGGAGCAGGGAAATCTACTCTTCTGAACCTTCTAGCAGGTGATTTGGTACCGAGCGAAGGTGAAGTTCGTAGGAGTCAGAAGCTGAGGATTGGGAGGTACTCACAGCATTTTGTAGACCTTCTGACAATGGAGGAAACACCAGTTCAATATCTTCTTCGTCTTCATCCTGATCAAGAGGGTCTAAGTAAGCAGGAGGCTGTTCGTGCTAAGTTGGGGAAGTTTGGACTTCCTAGCCACAACCACCTCACGCCAATTGCTAAATTATCTGGGGGCCAAAAAGCCAGGGTTGTTTTTACCTCAATTTCCATGTCAAAACCACACATATTACTGCTCGATGAACCGACGAATCACTTGGACATGCAGAGTATTGATGCACTTGCAGATGCCTTGGATGAGTTCACTGGTGGAGTTGTTCTGGTTAGTCATGATTCCAGACTCATATCACATGTCTGTGAGGATGAAGAAAAAAGTGAAATTTGGGTTGTTGAAAATGGCACTGTGGAGTTTTTCCCTGGAACCTTCGAGGAATACAAGGAAGAATTGCAAAAGGAGATTAAAGCTGAGGAGGCTCAACCAGGCCAAGAAAAACCTACTCCTGAAGACCCGGGATTCAATTGCATTCAAGGCTGTGGGATCAGCTCATCCGTGGACAATAAGTGGGTCATTTATGGAATCATTGCAATTGGGATATTCAAATTTATTCTTAAAACTTTTGATTCTTTTCATTTCGAATAT 3201 45.08 MMDFLQSLDPQILLGLAVAVLALAVGALYVLSSSKKSKYGGCLDPDVFKEFKLIKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQVMLLGLDQFLYLLQPHAATAAPPSLRRSPSRFTGAMGRKKTDEGGGNAKVKPGKDVSGKREKLSVSEMLASMDQKSDKPKKGSSSLSGGAKPQAKAPKNVAAYTDGIDLPPSDDEEEEIVSDGEQQSTSSQKRLPWQDRAEVKPLEVAVSDKELKKRERKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALQAVVSANEELVKLRQEVADLQNSDGGQDENDDDDAGERLAELYEKLQLLGSDAAEAQASKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVCNEIIHLHDLRLHFYRGNFDDFESGYEQRRKEMNKKFEIYDKQVKAAKRSGSRAQQEKVKDRAKFAAAKEASKNKSKGKVDEDDPLPEAPRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISHVCEDEEKSEIWVVENGTVEFFPGTFEEYKEELQKEIKAEEAQPGQEKPTPEDPGFNCIQGCGISSSVDNKWVIYGIIAIGIFKFILKTFDSFHFEY 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16113963 16143507 + Lsi01G017360.1 Lsi01g01736 654394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01736 1067 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Lsi01g01736 1067 CDD cyt_b5_reduct_like 51 257 - -
Lsi01g01736 1067 Pfam ABC transporter 474 639 IPR003439 GO:0005524
Lsi01g01736 1067 Pfam Oxidoreductase NAD-binding domain 159 261 IPR001433 GO:0016491
Lsi01g01736 1067 Gene3D - 752 1020 IPR027417 -
Lsi01g01736 1067 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 262 IPR039261 -
Lsi01g01736 1067 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lsi01g01736 1067 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 707 IPR003439 GO:0005524
Lsi01g01736 1067 Coils Coil 535 555 - -
Lsi01g01736 1067 PANTHER BNAA06G39310D PROTEIN 292 1010 - -
Lsi01g01736 1067 Gene3D - 457 745 IPR027417 -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lsi01g01736 1067 Pfam ABC transporter 803 938 IPR003439 GO:0005524
Lsi01g01736 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 702 IPR027417 -
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 272 390 - -
Lsi01g01736 1067 CDD ABCF_EF-3 459 682 - -
Lsi01g01736 1067 Gene3D - 141 272 IPR039261 -
Lsi01g01736 1067 ProSitePatterns ABC transporters family signature. 611 625 IPR017871 GO:0005524
Lsi01g01736 1067 Gene3D Translation factors 41 140 - -
Lsi01g01736 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1000 IPR027417 -
Lsi01g01736 1067 CDD ABCF_EF-3 786 988 - -
Lsi01g01736 1067 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 292 1010 - -
Lsi01g01736 1067 SMART AAA_5 483 683 IPR003593 -
Lsi01g01736 1067 SMART AAA_5 812 988 IPR003593 -
Lsi01g01736 1067 SUPERFAMILY Riboflavin synthase domain-like 43 151 IPR017938 -
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 721 761 - -
Lsi01g01736 1067 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 786 1011 IPR003439 GO:0005524
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 288 314 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01736 Lsi03g01657 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01736 Lsi-Chr1:16113963 Lsi09g01823 Lsi-Chr9:27030386 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01736 K06184 - csv:101207291 1332.01