Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01736 ATGATGGACTTCTTACAGTCTCTGGATCCCCAAATCCTTCTGGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTCTCTATGTATTATCCTCGTCCAAGAAAAGCAAATACGGAGGTTGCTTGGATCCAGATGTTTTCAAGGAGTTCAAACTTATCAAGCGTCTGCAGTTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACAAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGACGGCGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGGTGATGCTCCTCGGTCTTGATCAGTTTCTCTATTTGCTGCAACCTCACGCCGCCACCGCAGCCCCTCCATCTCTCCGTCGCTCGCCGTCGAGGTTCACTGGTGCAATGGGAAGGAAGAAAACAGATGAAGGTGGTGGAAACGCCAAAGTCAAGCCTGGTAAAGATGTTTCTGGGAAGAGAGAGAAGCTTTCGGTGTCAGAAATGCTTGCCAGTATGGATCAGAAATCAGATAAACCAAAAAAGGGATCTTCATCTTTGAGTGGTGGTGCTAAACCTCAAGCAAAGGCACCAAAAAATGTTGCAGCTTACACTGATGGCATTGATCTCCCTCCCTCAGATGATGAGGAAGAAGAAATTGTGTCTGATGGGGAGCAACAGAGTACCAGTTCCCAGAAACGGCTACCCTGGCAGGACAGGGCTGAGGTGAAGCCTCTAGAGGTGGCTGTAAGTGACAAAGAGTTGAAAAAACGAGAGAGGAAGGATATGTTTGCTGCCCATGCTGCAGAACAGGCCAGACAAGAAGCTCTAAAAGATGACCATGATGCTTTCACTGTTGTAATTGGTAGCCGAGCTTCGGTTCTTGATGGTAATGATGAAGCTGATGCAAATGTCAAAGACATTACAATCGATAATTTCTCTGTTTCAGCCAGAGGGAAAGAGCTTTTGAAAAATGCATCAGTGAAGATATCTCACGGGAAGAGGTATGGTTTAGTTGGGCCTAATGGTATGGGAAAGTCCACATTATTAAAGCTCCTTGCTTGGAGGAAGATACCGGTTCCTAAAAATATTGATGTCCTTTTGGTTGAACAAGAGGTGGTTGGTGATGATAGAACGGCACTTCAAGCAGTTGTTTCTGCTAATGAGGAGCTGGTCAAGCTTCGACAAGAAGTTGCTGATTTGCAGAATTCTGATGGTGGTCAAGATGAAAATGATGATGATGATGCAGGAGAGAGGCTTGCTGAGTTATATGAAAAGCTGCAGCTCTTGGGATCAGATGCAGCTGAGGCTCAAGCTTCCAAAATTCTTGCTGGACTGGGTTTTACCAAGGATATGCAAGCACGACCCACCCGTTCATTTAGTGGTGGATGGCGGATGAGGATTTCATTGGCTCGGGCTCTTTTTGTTCAGCCAACACTTCTATTACTAGATGAACCTACAAATCATCTAGACCTTCGGGCTGTTCTCTGGTTGGAGGAGTACCTCTGTCGATGGAAGAAAACTCTTGTTGTTGTGTCACACGATCGAGATTTCCTCAACAGTGTTTGCAACGAAATTATTCATCTTCATGACTTAAGGCTTCATTTTTATCGTGGAAATTTTGACGATTTTGAAAGTGGGTATGAGCAGCGTCGGAAAGAAATGAACAAGAAGTTTGAGATATATGATAAGCAGGTGAAAGCAGCTAAGAGGTCTGGAAGCAGGGCCCAACAAGAGAAGGTGAAAGACCGAGCAAAGTTTGCTGCTGCTAAGGAAGCCTCAAAGAACAAGTCCAAGGGAAAGGTTGATGAGGATGATCCCCTGCCAGAGGCCCCCAGAAAGTGGAGAGATTACAGTGTAGAATTCCACTTCCCTGAACCCACTGAGCTCACCCCACCATTATTACAGTTGATTGAAGTAAGCTTTAGCTATCCAAATAGGGAAGATTTTAGACTTTCTGATGTTGATGTGGGTATTGATATGGGAACGCGGGTTGCTATAGTTGGGCCCAATGGAGCAGGGAAATCTACTCTTCTGAACCTTCTAGCAGGTGATTTGGTACCGAGCGAAGGTGAAGTTCGTAGGAGTCAGAAGCTGAGGATTGGGAGGTACTCACAGCATTTTGTAGACCTTCTGACAATGGAGGAAACACCAGTTCAATATCTTCTTCGTCTTCATCCTGATCAAGAGGGTCTAAGTAAGCAGGAGGCTGTTCGTGCTAAGTTGGGGAAGTTTGGACTTCCTAGCCACAACCACCTCACGCCAATTGCTAAATTATCTGGGGGCCAAAAAGCCAGGGTTGTTTTTACCTCAATTTCCATGTCAAAACCACACATATTACTGCTCGATGAACCGACGAATCACTTGGACATGCAGAGTATTGATGCACTTGCAGATGCCTTGGATGAGTTCACTGGTGGAGTTGTTCTGGTTAGTCATGATTCCAGACTCATATCACATGTCTGTGAGGATGAAGAAAAAAGTGAAATTTGGGTTGTTGAAAATGGCACTGTGGAGTTTTTCCCTGGAACCTTCGAGGAATACAAGGAAGAATTGCAAAAGGAGATTAAAGCTGAGGAGGCTCAACCAGGCCAAGAAAAACCTACTCCTGAAGACCCGGGATTCAATTGCATTCAAGGCTGTGGGATCAGCTCATCCGTGGACAATAAGTGGGTCATTTATGGAATCATTGCAATTGGGATATTCAAATTTATTCTTAAAACTTTTGATTCTTTTCATTTCGAATAT 3201 45.08 MMDFLQSLDPQILLGLAVAVLALAVGALYVLSSSKKSKYGGCLDPDVFKEFKLIKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQVMLLGLDQFLYLLQPHAATAAPPSLRRSPSRFTGAMGRKKTDEGGGNAKVKPGKDVSGKREKLSVSEMLASMDQKSDKPKKGSSSLSGGAKPQAKAPKNVAAYTDGIDLPPSDDEEEEIVSDGEQQSTSSQKRLPWQDRAEVKPLEVAVSDKELKKRERKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALQAVVSANEELVKLRQEVADLQNSDGGQDENDDDDAGERLAELYEKLQLLGSDAAEAQASKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVCNEIIHLHDLRLHFYRGNFDDFESGYEQRRKEMNKKFEIYDKQVKAAKRSGSRAQQEKVKDRAKFAAAKEASKNKSKGKVDEDDPLPEAPRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISHVCEDEEKSEIWVVENGTVEFFPGTFEEYKEELQKEIKAEEAQPGQEKPTPEDPGFNCIQGCGISSSVDNKWVIYGIIAIGIFKFILKTFDSFHFEY 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16113963 16143507 + Lsi01G017360.1 Lsi01g01736 654394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01736 1067 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Lsi01g01736 1067 CDD cyt_b5_reduct_like 51 257 - -
Lsi01g01736 1067 Pfam ABC transporter 474 639 IPR003439 GO:0005524
Lsi01g01736 1067 Pfam Oxidoreductase NAD-binding domain 159 261 IPR001433 GO:0016491
Lsi01g01736 1067 Gene3D - 752 1020 IPR027417 -
Lsi01g01736 1067 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 262 IPR039261 -
Lsi01g01736 1067 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lsi01g01736 1067 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 707 IPR003439 GO:0005524
Lsi01g01736 1067 Coils Coil 535 555 - -
Lsi01g01736 1067 PANTHER BNAA06G39310D PROTEIN 292 1010 - -
Lsi01g01736 1067 Gene3D - 457 745 IPR027417 -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lsi01g01736 1067 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lsi01g01736 1067 Pfam ABC transporter 803 938 IPR003439 GO:0005524
Lsi01g01736 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 702 IPR027417 -
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 272 390 - -
Lsi01g01736 1067 CDD ABCF_EF-3 459 682 - -
Lsi01g01736 1067 Gene3D - 141 272 IPR039261 -
Lsi01g01736 1067 ProSitePatterns ABC transporters family signature. 611 625 IPR017871 GO:0005524
Lsi01g01736 1067 Gene3D Translation factors 41 140 - -
Lsi01g01736 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1000 IPR027417 -
Lsi01g01736 1067 CDD ABCF_EF-3 786 988 - -
Lsi01g01736 1067 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 292 1010 - -
Lsi01g01736 1067 SMART AAA_5 483 683 IPR003593 -
Lsi01g01736 1067 SMART AAA_5 812 988 IPR003593 -
Lsi01g01736 1067 SUPERFAMILY Riboflavin synthase domain-like 43 151 IPR017938 -
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 721 761 - -
Lsi01g01736 1067 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 786 1011 IPR003439 GO:0005524
Lsi01g01736 1067 MobiDBLite consensus disorder prediction 288 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01736 K06184 ABCF1; ATP-binding cassette, subfamily F, member 1 - csv:101207291 1332.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01736 Lsi03g01657 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01736 Lsi-Chr1:16113963 Lsi09g01823 Lsi-Chr9:27030386 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002655 2 2 2 3 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 3 3 2 0 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01736 Lsi_Chr01 FPKM 11.71661 13.077744 50.086224 51.445011 73.388466 84.1978 78.613243 29.878305 27.705359 29.507347