Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01762 ATGGAAGGAAAGGGAAATGGAATTGCCAATTTTGTTGAGGGAGCACAGCCTTACATTGCTATGATATCTCTTCAATTTGGCTATGCTGGAATGAACATCGTCACCAAGGTAGCTCTCAACCGCGGAATGAGCCATTACGTTCTCGTCACCTATCGACAAGCCTTTGCCACGATCGCCCTCGTTCCGTTCGCCTTCTTCTTCGAAAGGAAAGTGAGACCCAAGATTAGTTTCCCTGTGTTGATGCAGATTTTTCTTCTGGGTTTGTTAGGGCCAGTGATTGATCAAAACTTTTATTACGCTGGGCTGAAGCTCACTTCTCCTACCTTTTCATGTGCCATGAGCAATATGCTTCCTGCAATGACATTCATCTTGGCTCTTCTTTGCAGGATGGAGAAATTGGAGATAAAGAAAGTGAGATGCCAAGCAAAGGTGGTGGGAACATTGGCAATGACATTGAGGAATTACACAGCCCATCTCTCACTTACAACCCTTGTTTGCTTCTTTGGGACATTGCAATCCATGGCTATCACATTTGTAATGGAAAACAAAGCTTCTGTTTGGAACATTGGATGGGACATGAATCTTCTTGCTTCTGTTTATGCTGGTATAGTTTCATCAAGCATAGCTTATTATGTCCAAGGGATGATTATGCAAAAGAGAGGGCCTGTTTTTGTCACAGCCTTTACCCCTATGATCATGATCATTGTTGCTATAATGGGTTCTTTCATGCTTGCTGAGAAGATCTATATCGGACGTGTTGTTGGAGGTGTTGTAATGGTGGTGGGGCTGTATTCAGTGCTATGGGGGAAATACAAAGATTACAAAGAAAAGGAAGCAATAATAGAAGAAAGCACCATTGTTGAACCAGTGAAGCTTTTAATAAGTGGAGGCAAATTAGTTGAGAAAAAGAAGAAGAAATTAGCAACAGTAATTGAAGAACAACAACAAGAAGAAGAAACGACATCAACATCATCAAACGACATTGAAATGCAAAGGAACGATACAACATCAAATGTCGACAATAATAATAATAATAATAATGTTACAAAATTGCCTTGTCCTCCTCCACTACCCATTATTGTTGTTGTAGCTATGGATGAAGCACCAACAAAAGTTTGA 1119 40.48 MEGKGNGIANFVEGAQPYIAMISLQFGYAGMNIVTKVALNRGMSHYVLVTYRQAFATIALVPFAFFFERKVRPKISFPVLMQIFLLGLLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFILALLCRMEKLEIKKVRCQAKVVGTLAMTLRNYTAHLSLTTLVCFFGTLQSMAITFVMENKASVWNIGWDMNLLASVYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPMIMIIVAIMGSFMLAEKIYIGRVVGGVVMVVGLYSVLWGKYKDYKEKEAIIEESTIVEPVKLLISGGKLVEKKKKKLATVIEEQQQEEETTSTSSNDIEMQRNDTTSNVDNNNNNNNVTKLPCPPPLPIIVVVAMDEAPTKV 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16447996 16452040 - Lsi01G017620.1 Lsi01g01762 654420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01762 372 MobiDBLite consensus disorder prediction 313 351 - -
Lsi01g01762 372 PANTHER WAT1-RELATED PROTEIN 151 302 - -
Lsi01g01762 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 191 271 - -
Lsi01g01762 372 MobiDBLite consensus disorder prediction 314 350 - -
Lsi01g01762 372 Pfam EamA-like transporter family 18 138 IPR000620 GO:0016020|GO:0016021
Lsi01g01762 372 Pfam EamA-like transporter family 151 267 IPR000620 GO:0016020|GO:0016021
Lsi01g01762 372 PANTHER WAT1-RELATED PROTEIN 11 149 IPR030184 GO:0016021|GO:0022857
Lsi01g01762 372 PANTHER WAT1-RELATED PROTEIN 11 149 - -
Lsi01g01762 372 PANTHER WAT1-RELATED PROTEIN 151 302 IPR030184 GO:0016021|GO:0022857
Lsi01g01762 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 142 - -
Lsi01g01762 372 Coils Coil 300 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01762 Lsi-Chr1:16447996 Lsi04g02384 Lsi-Chr4:30985937 1.40E-84 dispersed
Lsi06g01306 Lsi-Chr6:23624029 Lsi01g01762 Lsi-Chr1:16447996 5.39E-42 dispersed
Lsi01g01762 Lsi-Chr1:16447996 Lsi03g01629 Lsi-Chr3:27416313 5.88E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01762 - - cpep:111803342 530.406