Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01790 ATGGGATCTTCGGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGATTTTGGGGTTTGTGTTTTCTTATGCATTTTTGCGTCTTCTTCTATGGCAGTCACTACTGTTGATTCTGGGAGTAAAGCTTTGGAGTTTTTGGGATATGACCCTGGAAATAACTCGATTCCTTCTCTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGTCAAACAAACTGAGTCTGGGAGGTGTTTCTGAAGAAGTTTCTCTGGTTTTGCAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCAGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAAAACAGTAGAAGACGAGCCTGATTCAGTAAGCCAATCCCAAGCACTAGAGCAACAACAGCTACAACAGCAACAACATGAACAAGAACAATTACAACTGCTACCGCAGCAGATCCCGACATCTACGCAAGATCAAGATCGGTTGCAATCCGTACCTCTTCTGCCAACACCGCCACAGGAGCAAGAACAGTTGCAATTACTCCCCCCAACACCACCGCAACAATCAAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 903 42.97 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQDFGVCVFLCIFASSSMAVTTVDSGSKALEFLGYDPGNNSIPSLSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKSNKLSLGGVSEEVSLVLQGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPEKTVEDEPDSVSQSQALEQQQLQQQQHEQEQLQLLPQQIPTSTQDQDRLQSVPLLPTPPQEQEQLQLLPPTPPQQSNNKRKAMEDGLSPDRTRPRYNGITTMV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17377008 17379351 + Lsi01G017900.1 Lsi01g01790 654448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01790 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 51 298 - -
Lsi01g01790 300 Gene3D - 17 289 - -
Lsi01g01790 300 ProSiteProfiles Response regulatory domain profile. 17 188 IPR001789 GO:0000160
Lsi01g01790 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 41 IPR045279 GO:0009736
Lsi01g01790 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR 51 298 IPR045279 GO:0009736
Lsi01g01790 300 MobiDBLite consensus disorder prediction 206 279 - -
Lsi01g01790 300 Pfam Response regulator receiver domain 91 179 IPR001789 GO:0000160
Lsi01g01790 300 CDD REC_typeA_ARR 18 183 - -
Lsi01g01790 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 11 41 - -
Lsi01g01790 300 MobiDBLite consensus disorder prediction 195 300 - -
Lsi01g01790 300 SMART REC_2 16 184 IPR001789 GO:0000160
Lsi01g01790 300 SUPERFAMILY CheY-like 14 196 IPR011006 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01790 Lsi03g01597 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01790 Lsi-Chr1:17377008 Lsi09g00795 Lsi-Chr9:9086452 1.93E-62 dispersed
Lsi01g01790 Lsi-Chr1:17377008 Lsi03g01597 Lsi-Chr3:26990232 4.60E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24702 PF00072 Response_reg 1.60E-09 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01790 K14492 - csv:101220999 387.111