Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01809 | ATGGCGGATTACGATCTAACTCCACGAATCGCGCCGAATCTGGACCGTCATCTTGTTTTTCCTCTCCTTGAGTTCCTTCAAGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGACGATGTTCCTCAAGGCATGGGCATTTCTTGGAGGGCGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCTGCAGCGCCACTTGTTTCTTTTTTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCTTGAGTGCTCTGTGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGGTGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATCTTTTTCAATCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCTATCACAGAGTTTTTGACTTGTGTCTATGTCAACTATGATTTTGACGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGAAAGAGGCTTGAAGAAGGCAACCTTTCTACCGTCCCTTTGAGAGATGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAGAAATGATGTGCTGGTAACTTGTGGCAGTGTCCTTGCCGAGAAGTTGAACTTAAATTATGAGGAAGCTGAAAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCAAAGATTGATTCCAAGACAGGAACGGTTATAATGGAACCTAACCAGCCCAACGTATATGAAGAACTGATAGACCACACAAAATCATTATCTGGGCGTACTTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGACAACTAGATAA | 1347 | 42.24 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQGMGISWRAEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKVNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMRNDVLVTCGSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQTTR | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18014944 | 18018689 | + | Lsi01G018090.1 | Lsi01g01809 | 654467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01809 | 448 | SUPERFAMILY | TPR-like | 121 | 194 | IPR011990 | GO:0005515 | |
Lsi01g01809 | 448 | PIRSF | Transl_init_eIF3e | 1 | 448 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Lsi01g01809 | 448 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 138 | IPR019010 | - | |
Lsi01g01809 | 448 | Pfam | PCI domain | 287 | 410 | IPR000717 | - | |
Lsi01g01809 | 448 | SMART | eIF3_N_2 | 5 | 138 | IPR019010 | - | |
Lsi01g01809 | 448 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 446 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Lsi01g01809 | 448 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 334 | 427 | - | - | |
Lsi01g01809 | 448 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 440 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Lsi01g01809 | 448 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 446 | - | - | |
Lsi01g01809 | 448 | SUPERFAMILY | Winged helix DNA-binding domain | 335 | 415 | IPR036390 | - | |
Lsi01g01809 | 448 | SMART | PINT_4 | 334 | 427 | IPR000717 | - | |
Lsi01g01809 | 448 | ProSiteProfiles | PCI domain profile. | 221 | 414 | IPR000717 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01809 | K03250 | - | csv:101205199 | 843.573 |