Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01809 ATGGCGGATTACGATCTAACTCCACGAATCGCGCCGAATCTGGACCGTCATCTTGTTTTTCCTCTCCTTGAGTTCCTTCAAGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGACGATGTTCCTCAAGGCATGGGCATTTCTTGGAGGGCGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCTGCAGCGCCACTTGTTTCTTTTTTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCTTGAGTGCTCTGTGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGGTGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATCTTTTTCAATCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCTATCACAGAGTTTTTGACTTGTGTCTATGTCAACTATGATTTTGACGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGAAAGAGGCTTGAAGAAGGCAACCTTTCTACCGTCCCTTTGAGAGATGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAGAAATGATGTGCTGGTAACTTGTGGCAGTGTCCTTGCCGAGAAGTTGAACTTAAATTATGAGGAAGCTGAAAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCAAAGATTGATTCCAAGACAGGAACGGTTATAATGGAACCTAACCAGCCCAACGTATATGAAGAACTGATAGACCACACAAAATCATTATCTGGGCGTACTTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGACAACTAGATAA 1347 42.24 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQGMGISWRAEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKVNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMRNDVLVTCGSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQTTR 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18014944 18018689 + Lsi01G018090.1 Lsi01g01809 654467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01809 448 SUPERFAMILY TPR-like 121 194 IPR011990 GO:0005515
Lsi01g01809 448 PIRSF Transl_init_eIF3e 1 448 IPR016650 GO:0003743|GO:0005737|GO:0005852
Lsi01g01809 448 Pfam eIF3 subunit 6 N terminal domain 5 138 IPR019010 -
Lsi01g01809 448 Pfam PCI domain 287 410 IPR000717 -
Lsi01g01809 448 SMART eIF3_N_2 5 138 IPR019010 -
Lsi01g01809 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 446 IPR016650 GO:0003743|GO:0005737|GO:0005852
Lsi01g01809 448 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 334 427 - -
Lsi01g01809 448 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 440 IPR016650 GO:0003743|GO:0005737|GO:0005852
Lsi01g01809 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 446 - -
Lsi01g01809 448 SUPERFAMILY Winged helix DNA-binding domain 335 415 IPR036390 -
Lsi01g01809 448 SMART PINT_4 334 427 IPR000717 -
Lsi01g01809 448 ProSiteProfiles PCI domain profile. 221 414 IPR000717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01809 K03250 - csv:101205199 843.573