Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01851 ATGGAGGTCGATACTAATTCTGGGAAACCGTCGAAACAGGTTGGGGGTGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAGGCAGTGGAAGATGGTGATGGTAATGGAGTGGCAGGGGCTCAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAAGGATCTTTTAATCACATTCCTTTGCTCACCACCGGACGATCTGTTTCTGGAGAACTGTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCTGAAAGCGGGAGCCGGGCTAACTATAGAATCATGGATCAATCAAGAGACTCGGGTTCTGCTAGATTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCACACACCTTCTGAAGGGAGGGGTGGTGCCGATTTTGATGCCAGCACTGATGTCGTGATCGATGATTCTTTACTAAATGACGAAGCTCGCCAGCCTTTATCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTACACTATCGAATTACAAATCCAGTTCCGAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTGTATCTTGGATTCTGGATCAGTTCCCCAAATGGCTCCCGGTCAATCGTGAGACATATCTTGATAGGCTTGCTCTAAGATACGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCTATGTTAACATTTGAAGCCTTGTCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAATACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTGAAGGAACGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCAGATGAAGGGTGGGTCATGCAAGATGGTACGCCATGGCCTGGAAATAACACGAGAGATCATCCAGGAATGATACAGGTTTTCTTGGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTAACCAACGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTGGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACAGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCGGTGTATGTGGGAACAGGATGTGTTTTCAATCGAACTGCATTGTACGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGCTATTCTCCAGTTGCTTTGGGAAATCGAAAAAGAAAAGTTCTAAATCGAAAAGAAAGGATTCTGATAAGAAGCAAACTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGGAGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCACAGTCTGCCACTCCAGAATCTCTTCTTAAAGAAGCCATTCATGTTATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATCCCAGACCGTCCTGCATTTAAAGGATCTGCTCCCATTAATCTTTCCGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATCCTTTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTTATTATTCCTCAGATCAGCAATCTTGCTAGCATCTGGTTTATTTCGCTCTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATTGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATCGATACCAATTTCACAGTTACCTCGAAAGCATCCGATGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGCTATCAATCTTGGGGACCCCTTTTCGGTAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATCGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGAATCGATCCCTTCACAACCCGGGTAACTGGTCCCGATGTTGAACAGTGCGGAATCAACTGCTAA 3153 44.75 MEVDTNSGKPSKQVGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHTPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19884600 19890917 + Lsi01G018510.1 Lsi01g01851 654509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01851 1050 MobiDBLite consensus disorder prediction 623 655 - -
Lsi01g01851 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Lsi01g01851 1050 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Lsi01g01851 1050 SUPERFAMILY RING/U-box 7 87 - -
Lsi01g01851 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 852 IPR029044 -
Lsi01g01851 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Lsi01g01851 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi01g01851 1050 PANTHER CELLULOSE SYNTHASE 11 1050 - -
Lsi01g01851 1050 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Lsi01g01851 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Lsi01g01851 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 11 1050 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01851 Lsi-Chr1:19884600 Lsi02g02575 Lsi-Chr2:32203362 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01851 K10999 - csv:101211779 2116.66