Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01854 | ATGGGAACCCCAGAATTCCCTAATCTGGGGAAGCATTGCAACTTTCAGGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAGACGGGATGTAACCGTTGTCATTTGTCCGCTTTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGATCCAAACATTACTTGGGAGATACATGTGAACACTGAATGTGACCCATCAAACTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTCCGTAGACCATTGTTTGAAGCATCGGTTTGGACCTGACCATAAATGTCCTGGACCGAAAAAACCCGAACCAACAGGTTTTCCATTTGTTGGTCTATTAAGTAGAAATAGAAAAGAAGAGAAAGGGCCCAAGAAAGCATTGCCCACCACATCTTCCTCTAAGTGGACTACAGCCTTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCAAGCATGACGAAGTTGTCAAATGAATTCAGTCAAACTTGGATAACATCCGGTAGCAGCAGCAACGGTGGAAGTGGAAATGGACAAGTTGAGCAATGTCCACAATGTAGCGCTAAGTTTTCGTCTGTTTCATCGTTAATAGACCATGTCGAAAAAGTTCATGAAAAGGGTGGAAATCGACCTGGGGCGAAGAAGGTTGTGATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTGTTGACCCTGTTGCCCTTGTGGAGCACATTGAGAGGGATCATGGTGGCACTTCAAGAGCTTGA | 873 | 45.02 | MGTPEFPNLGKHCNFQDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRELLTFSNTIKCRDCSVDHCLKHRFGPDHKCPGPKKPEPTGFPFVGLLSRNRKEEKGPKKALPTTSSSKWTTAFLNAASSVKASAEASMTKLSNEFSQTWITSGSSSNGGSGNGQVEQCPQCSAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19993776 | 19996192 | + | Lsi01G018540.1 | Lsi01g01854 | 654512 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01854 | 290 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 1 | 290 | - | - | |
Lsi01g01854 | 290 | Gene3D | Classic Zinc Finger | 189 | 289 | - | - | |
Lsi01g01854 | 290 | Gene3D | - | 2 | 58 | IPR035896 | - | |
Lsi01g01854 | 290 | Pfam | AN1-like Zinc finger | 101 | 141 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 263 | 284 | IPR013087 | - | |
Lsi01g01854 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 223 | 246 | IPR013087 | - | |
Lsi01g01854 | 290 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | PANTHER | ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 | 1 | 290 | - | - | |
Lsi01g01854 | 290 | Pfam | C2H2-type zinc finger | 224 | 246 | - | - | |
Lsi01g01854 | 290 | SUPERFAMILY | AN1-like Zinc finger | 93 | 143 | IPR035896 | - | |
Lsi01g01854 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 261 | 289 | IPR013087 | - | |
Lsi01g01854 | 290 | SUPERFAMILY | AN1-like Zinc finger | 4 | 59 | IPR035896 | - | |
Lsi01g01854 | 290 | Gene3D | - | 81 | 148 | IPR035896 | - | |
Lsi01g01854 | 290 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270 | |
Lsi01g01854 | 290 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 225 | 246 | IPR013087 | - | |
Lsi01g01854 | 290 | SMART | c2h2final6 | 223 | 246 | IPR013087 | - | |
Lsi01g01854 | 290 | SMART | c2h2final6 | 261 | 284 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01854 | Lsi-Chr1:19993776 | Lsi03g01428 | Lsi-Chr3:25247337 | 6.15E-39 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24704 | PF01428 | zf-AN1 | 2.90E-08 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01854 | - | - | csv:101212256 | 580.867 |