Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01854 ATGGGAACCCCAGAATTCCCTAATCTGGGGAAGCATTGCAACTTTCAGGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAGACGGGATGTAACCGTTGTCATTTGTCCGCTTTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGATCCAAACATTACTTGGGAGATACATGTGAACACTGAATGTGACCCATCAAACTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTCCGTAGACCATTGTTTGAAGCATCGGTTTGGACCTGACCATAAATGTCCTGGACCGAAAAAACCCGAACCAACAGGTTTTCCATTTGTTGGTCTATTAAGTAGAAATAGAAAAGAAGAGAAAGGGCCCAAGAAAGCATTGCCCACCACATCTTCCTCTAAGTGGACTACAGCCTTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCAAGCATGACGAAGTTGTCAAATGAATTCAGTCAAACTTGGATAACATCCGGTAGCAGCAGCAACGGTGGAAGTGGAAATGGACAAGTTGAGCAATGTCCACAATGTAGCGCTAAGTTTTCGTCTGTTTCATCGTTAATAGACCATGTCGAAAAAGTTCATGAAAAGGGTGGAAATCGACCTGGGGCGAAGAAGGTTGTGATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTGTTGACCCTGTTGCCCTTGTGGAGCACATTGAGAGGGATCATGGTGGCACTTCAAGAGCTTGA 873 45.02 MGTPEFPNLGKHCNFQDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRELLTFSNTIKCRDCSVDHCLKHRFGPDHKCPGPKKPEPTGFPFVGLLSRNRKEEKGPKKALPTTSSSKWTTAFLNAASSVKASAEASMTKLSNEFSQTWITSGSSSNGGSGNGQVEQCPQCSAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19993776 19996192 + Lsi01G018540.1 Lsi01g01854 654512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01854 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 290 - -
Lsi01g01854 290 Gene3D Classic Zinc Finger 189 289 - -
Lsi01g01854 290 Gene3D - 2 58 IPR035896 -
Lsi01g01854 290 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lsi01g01854 290 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Lsi01g01854 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lsi01g01854 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Lsi01g01854 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 246 IPR013087 -
Lsi01g01854 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lsi01g01854 290 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 290 - -
Lsi01g01854 290 Pfam C2H2-type zinc finger 224 246 - -
Lsi01g01854 290 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Lsi01g01854 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 289 IPR013087 -
Lsi01g01854 290 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Lsi01g01854 290 Gene3D - 81 148 IPR035896 -
Lsi01g01854 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lsi01g01854 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lsi01g01854 290 ProSitePatterns Zinc finger C2H2 type domain signature. 225 246 IPR013087 -
Lsi01g01854 290 SMART c2h2final6 223 246 IPR013087 -
Lsi01g01854 290 SMART c2h2final6 261 284 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01854 Lsi-Chr1:19993776 Lsi03g01428 Lsi-Chr3:25247337 6.15E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24704 PF01428 zf-AN1 2.90E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01854 - - csv:101212256 580.867