Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01857 ATGGCTTTTTTGTGTTGTCATTTCTCCATTTTTCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTTTTGAGAGCTGAGCTTGATGATCAAATCACTATGTCCACCATTAGAGAGGAGCTTCAAGTTCCTGGGTGGAGCTCTAATATCTCTGACTATTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGCAATCTAACTTTGATTTCTGAGCTCAAAGCTTTGAAATGGCTTGACCTATCCTACAATGACTTCCACGGTGAGATTCCGTCGAGTTTTTCGAACTTACCGGAGCTCGAATTCCTTGATTTGTCTTTGAACAAGTTTGATGGTTCGATCCCACCCGAGTTTGGTGGTCTCAAGAACCTCAAATCAATGAACCTCTCCAACAATCTCTTGGTGGGAGAAATTCCAGATGAGCTTCAAGACTTAGAGAAGTTGCAGGATTTTCAAATTTCTAGCAACAGGTTGAGTGGTTTAATTCCAAGCTGGGTTGGAAATTTGAGTCATCTAAGAGTTTTTACAGTCTATGAGAATGACTTTGGTGGTGTAATTCCTGATAATCTTGGTTCAGTTTCTAATCTCCAAGTGTTGAATCTGCATACCAACAGGCTTGAAGGCTCGATTCCTCGAAGCATTTTCGCTTCAGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGTCTGGTAATCTTCCTGAAGAGATTGGGAACTGCAAAAGGCTTACTAGCGTTCGAATCGGGAACAATAATCTTGTTGGTGTGATTCCTCCAGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTGGATAGCAATCACCTTTCAGGCGATATACCGTCTCAGTTTTCGCGGTGCTCTAATCTTACTCTGCTTAATCTAGCCTCGAACGGATTCACCGGGGTGATTCCTCCTGAACTTGGGGAGCTGATGAATCTTCAGGAGCTTATTCTTTCTGGCAATAGCCTGTATGGTGACATTCCTAGATCAATGCTCGGATGCAAAAATCTCAACAAGCTTGATTTAAGCAGTAATAGATTTAATGGTACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCTAATCAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGACTCGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCAGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCCGGCGATATCCCTTTTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAAAAAAGTGCAAATTCCAGTTTTCTGGGAAATGAAGGCCTTTGCGGGGCGCCACTAAGCATTTCGTGTAAGAATTCGATTGGTTCAGACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCCGGGCTGGCAGTTTTTGTATCAGTTACTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAGGAGAAAGCAGCAAAATCTTCAGGGACCACAGATGATGAAACTATCAACGATCAACCACCGATAATAGCGGGAAATGTCTTCGACGATAATCTCCGACAGGAAATAGATCTCGATACAGTCGTGAAAGCAACTTTGAAGGATTCAAGCAAGCTCATCTTTGGCACTTTTAGTAGTGTTTATAAGGCGGTTATGCCTTCGGGTATGATGGTATCAGTTAAGAGACTAAAATCCATGGATAAGACTATCATTCATCATCAAAGCAAGATGATTAGAGAGCTTGAAAGGCTTGGCAAACTGAGTCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCATAATTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAACAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCCATTGCTATTGGAACAGCAGAAGGGCTTGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATCTCATCATCTAATGTTCTTTTAGATGCCAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTGGCAGGTTCATTTGGCTACATTCCACCAGAATATGCATATACGATGCAAGTTACGGCCCCGGGAAACGTTTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATAGTGCTCCTTCGAGGGGCGAAACACCCGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTTGGCTGGAGGAAGGAAATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTCTGGAGATCAAGCAAAATTGA 2676 41.52 MAFLCCHFSIFLVVGLLSNSQFLRAELDDQITMSTIREELQVPGWSSNISDYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLISELKALKWLDLSYNDFHGEIPSSFSNLPELEFLDLSLNKFDGSIPPEFGGLKNLKSMNLSNNLLVGEIPDELQDLEKLQDFQISSNRLSGLIPSWVGNLSHLRVFTVYENDFGGVIPDNLGSVSNLQVLNLHTNRLEGSIPRSIFASGKLEILVLTQNRLSGNLPEEIGNCKRLTSVRIGNNNLVGVIPPAIGNVSSLAYFEVDSNHLSGDIPSQFSRCSNLTLLNLASNGFTGVIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNQIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPFELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGAPLSISCKNSIGSDNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTTDDETINDQPPIIAGNVFDDNLRQEIDLDTVVKATLKDSSKLIFGTFSSVYKAVMPSGMMVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHNYLPNGTLAQLLHESTKQPEYEPDWPTRFSIAIGTAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20239366 20242770 - Lsi01G018570.1 Lsi01g01857 654515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01857 891 Gene3D Transferase(Phosphotransferase) domain 1 689 891 - -
Lsi01g01857 891 Gene3D Ribonuclease Inhibitor 27 175 IPR032675 -
Lsi01g01857 891 SMART LRR_typ_2 111 134 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 327 351 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 375 399 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 87 110 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 207 231 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 135 158 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 448 469 IPR003591 -
Lsi01g01857 891 SMART LRR_typ_2 159 182 IPR003591 -
Lsi01g01857 891 SUPERFAMILY Protein kinase-like (PK-like) 614 886 IPR011009 -
Lsi01g01857 891 SUPERFAMILY L domain-like 253 515 - -
Lsi01g01857 891 SUPERFAMILY L domain-like 43 298 - -
Lsi01g01857 891 CDD STKc_IRAK 619 888 - -
Lsi01g01857 891 Pfam Leucine Rich Repeat 90 111 IPR001611 GO:0005515
Lsi01g01857 891 Gene3D Phosphorylase Kinase; domain 1 579 688 - -
Lsi01g01857 891 ProSiteProfiles Protein kinase domain profile. 610 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01857 891 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 8 889 - -
Lsi01g01857 891 Gene3D Ribonuclease Inhibitor 176 230 IPR032675 -
Lsi01g01857 891 Pfam Leucine rich repeat 132 172 IPR001611 GO:0005515
Lsi01g01857 891 Pfam Leucine rich repeat 329 388 IPR001611 GO:0005515
Lsi01g01857 891 Pfam Leucine rich repeat 257 315 IPR001611 GO:0005515
Lsi01g01857 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 889 - -
Lsi01g01857 891 Gene3D Ribonuclease Inhibitor 231 521 IPR032675 -
Lsi01g01857 891 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672|GO:0006468
Lsi01g01857 891 Pfam Protein kinase domain 614 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01857 Lsi-Chr1:20239366 Lsi09g01168 Lsi-Chr9:18893062 1.18E-09 dispersed
Lsi01g01857 Lsi-Chr1:20239366 Lsi05g01804 Lsi-Chr5:25311429 7.08E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83308 PF00069 Pkinase 1.70E-27 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01857 - - csv:101215786 1644.79