Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01891 ATGGCGGATTTCCAAAGCTACATAATTCTCTTCCTCATATGGTTAGTTTCCACCTTCACAATTCGCTTAATCTTTACCAAAAACAAACATAAGTCTCGTCTTCCTCCAAGCCCTTTTGCTCTCCCCATCATCGGCCATCTCCATCTCCTCAGTCCGTCGCCCCACAAAGCTTTCCACAAGCTCTCGACCCGCCATGGACCACTAATGCACCTCCGTTTAGGATCGGTCCCTTGCATCGTAGTTTCGTCACCCGAAACAGCGAAACAAATCCTCAAAACACATGAATCTTCCTTCTCCAACAGACCCCATTTGTCAGCAGTTGACTATCTAACCTATGGCTCAGCTGATTTCTCCTTTGCTCCCTATGGACCTTATTGGAAGTTCATGAAGAAACTTTGTATGTCGGAGCTCCTCGGCGGTAGGACGCTCAACAGCCTCTGCCCCATGAGAGAGGACGAGAGACGGCGGTTTCTACGGTCGCTGCAATCGAAGGCGGAGGAGGGGAAAGAAGTTGATGTTGGAGGAGAGTTGATGAGGTTGAGCAACAATGTGATATCTAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAAGAGGCTAAGGGGATAAGAAAATTGGTGAAGGATATAGCTGTACTTTCAGGGACTTTTAATGTCTCAGATTATATTTGGTTTTGTAAAAATTTGGACTTGCAAAGGCTTGGGAAGAGGCTTAAGGAAGTTCATGAGAGGTTTGATGAGATGATGGAGAGAATGATAAAAGAACATGAAGAGAATAGTGGTGATGAGAAAGTGAAGGATTTGCTTGATATTTTGCTTCTTAAGTTTGGAGATCAAAACTCAGAGGTCAAGTTGACTAAAGAGAACATTAAGGCCTTTGTTCTGGACATATTTGCAGCAGGGACAGACACATCAGCAATAACAACAGAATGGGCATTAGCAGAGCTAATAAACCATCCAAACATAATGGAGAAAGCAAGAGAAGAAGTTCACAGAGTTGTAGGAAAGAACAAAGTGATTGAGGAATCAGACATTGCCAATCTTCCCTATCTCCAAGCAATAGTAAAAGAGACATTAAGGCTTCACTCAAGCCCATTGATAGTGAGGGAATCAACTGAGAGTTGCACAATAAGTGGTTATGAGATAGCAGCAAAAACTCAAGTTTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCATTGGGAAAATCCTCTTGAGTTTAAGCCAGAAAGGTTTATGGACAAAGAAGGGAGTGTGAATAGTGGTGATTTGAGAGGGCAGAATTTTCAGTTGTTGCCATTTGGGAGTGGAAGAAGAAGCTGTCCTGGAATAACTCTTGCTTTGCTAATGGTTCAGACAACTTTGGGTTGTATGATTCAATGCTTTGATTGGAAGGTTAATGGAGAAAATGGGAAAGTTGATATGGAAGAAGGCCCTGGCCTTACACTTCCTAGGGCACACCCTTTGGTTTGTGTTCCAAACCCTTTGATTAAAGCCATATGA 1509 43.07 MADFQSYIILFLIWLVSTFTIRLIFTKNKHKSRLPPSPFALPIIGHLHLLSPSPHKAFHKLSTRHGPLMHLRLGSVPCIVVSSPETAKQILKTHESSFSNRPHLSAVDYLTYGSADFSFAPYGPYWKFMKKLCMSELLGGRTLNSLCPMREDERRRFLRSLQSKAEEGKEVDVGGELMRLSNNVISRMTLGKRCAEEEEEAKGIRKLVKDIAVLSGTFNVSDYIWFCKNLDLQRLGKRLKEVHERFDEMMERMIKEHEENSGDEKVKDLLDILLLKFGDQNSEVKLTKENIKAFVLDIFAAGTDTSAITTEWALAELINHPNIMEKAREEVHRVVGKNKVIEESDIANLPYLQAIVKETLRLHSSPLIVRESTESCTISGYEIAAKTQVYVNVWAIGRDPNHWENPLEFKPERFMDKEGSVNSGDLRGQNFQLLPFGSGRRSCPGITLALLMVQTTLGCMIQCFDWKVNGENGKVDMEEGPGLTLPRAHPLVCVPNPLIKAI 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21807366 21809756 - Lsi01G018910.1 Lsi01g01891 654549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01891 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Lsi01g01891 502 Coils Coil 232 252 - -
Lsi01g01891 502 Gene3D Cytochrome P450 20 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 500 - -
Lsi01g01891 502 Pfam Cytochrome P450 35 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 SUPERFAMILY Cytochrome P450 28 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01891 502 PANTHER CYTOCHROME P450 93A2 5 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01891 Lsi-Chr1:21807366 Lsi03g01218 Lsi-Chr3:22737963 2.46E-107 dispersed
Lsi03g01219 Lsi-Chr3:22754816 Lsi01g01891 Lsi-Chr1:21807366 2.12E-82 dispersed
Lsi03g01220 Lsi-Chr3:22757413 Lsi01g01891 Lsi-Chr1:21807366 2.54E-42 dispersed
Lsi03g01714 Lsi-Chr3:28510341 Lsi01g01891 Lsi-Chr1:21807366 8.80E-117 dispersed
Lsi09g00352 Lsi-Chr9:3673185 Lsi01g01891 Lsi-Chr1:21807366 1.19E-90 dispersed
Lsi01g01891 Lsi-Chr1:21807366 Lsi03g01713 Lsi-Chr3:28504346 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01891 K24188 - csv:101213143 903.279