Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01902 ATGGAGGCTGGAGTGAGCAATAATAACAAAAATGATGAGAAGGGGTTGCCGGCGGCGGAGAGTGAGATCATAAGAAAGTCAACGCCGCCACCGTTTCTGGTGAAGACTTATACGGCAGTGGAGGATCCAGCGACGGACGAGGTGATATCGTGGAATGGTGACGGGACGGCGTTTGTAGTTTGGCAGACGGCGGAATTCGCTAAAGATGTATTGCCAAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGGATTTCGAAAGGTGACCACAAGAAGGTGGGAATTTTGCAACGAAAAATTTCAAAAGGGTAAAAAGGAAAAGCTTTGCGAAATACAAAGAAGAAAGACATGGACCAACAAACAACAACAACAATATGAGGTTGATGAAGATCAAAGATCCTCCTCTTCAAACTCATCATCTTCACAATACAATACTCTAATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCACAGAGCTTGCAAGCATGAAATGCAAATGCAGAGAGCTTTTTGATTTGGTGGCTAAGTATGAAAATATTTCAAAAAAAGAAGAGGAAGATGAGAGGCCAAAGTTATTTGGAGTAAGGTTGGAAGAAGGAGAGAGAGAGAGGAAGAGAAAAAGGATAGAAGAGATTAGTGAAACTGCAACTTTTTTGCAGTCTCAATCATACAAATGA 711 41.49 MEAGVSNNNKNDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTYGFRKVTTRRWEFCNEKFQKGKKEKLCEIQRRKTWTNKQQQQYEVDEDQRSSSSNSSSSQYNTLMDENKRLKKENGALSTELASMKCKCRELFDLVAKYENISKKEEEDERPKLFGVRLEEGERERKRKRIEEISETATFLQSQSYK 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22583386 22591686 - Lsi01G019020.1 Lsi01g01902 654560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01902 236 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 21 235 - -
Lsi01g01902 236 MobiDBLite consensus disorder prediction 127 151 - -
Lsi01g01902 236 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi01g01902 236 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 235 IPR027725 -
Lsi01g01902 236 Coils Coil 150 177 - -
Lsi01g01902 236 Gene3D - 24 123 IPR036388 -
Lsi01g01902 236 SUPERFAMILY Winged helix DNA-binding domain 28 121 IPR036390 -
Lsi01g01902 236 Coils Coil 206 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01902 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101214829 340.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01902 Lsi-Chr1:22583386 Lsi03g01558 Lsi-Chr3:26547120 8.56E-81 dispersed
Lsi01g01902 Lsi-Chr1:22583386 Lsi01g01903 Lsi-Chr1:22592252 2.77E-64 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003188 2 2 1 0 0 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 2 2 2 3 1 1 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24706 PF00447 HSF_DNA-bind 3.90E-32 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01902 Lsi_Chr01 FPKM 3.799624 3.066073 2.33947 1.463511 5.171809 6.456883 4.795488 0.807451 0.659618 0.402028