Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01904 ATGCCCCCATTTCCTTCCTTCTTCCTACTCACCTTCTTCTCCTTCTTCCTTTCTTTCACTTCCTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCTCTCAAGGCCGCCATTGAATCCGACCCATCTCACATCCTTGAGTCCTGGTCCGAGTTCGATTCCACCCCATGCCACTGGCCCGGAATCGTCTGCACTCTCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACTGGCTACATCCCTTCCGAACTCGGTCTCCTCGATTCCCTCCGCCGCCTCACTCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACAAATCTCGTCGTTCTAGACCTTTCCCACAACTCCCTCTCTGGTTCGCTTTCCGATCAAATCGGCGATCTGAGGAAGCTTCGGCATCTTGATTTATCCTCAAATGCCCTCAATGGTTCTCTCCCTAATCGCCTCACTGACCTAACCGACCTCGTCGGAACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCTTGCTTCGGCAACCTCCCGCTGATCGTGAATCTCGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAGGTGGGTTCGCTGTTGAATCAAGGTCCAACGGCGTTCTCCGGCAACCCGAGTCTGTGTGGGTTTCCGTTACAGACGCTATGTCCGGAAGCACAGAACCCGAATGTCTTTCCTGAGAATCCGCAGAATCCCAAGTCACTGAACCCGAACTTCCCGGGATATGGCGGCCGGAGAGGGAGTAGCGGCGGTGGGGTGGCTGGGTCGGCGGCGGTGGCAGTCGTATCGTCGATATTCGCAGTGGTGGGGGCGGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGCGGTAGTGGGGAGGCTGGAAGAGGGCAAAACGGGAAAGGGAAGTCCGGAAGGGGAAAGTTGCGGGGAGTTGGAAGGGCAAGATGGTAAATTCGTAGTGATGGATGAAGGGATGAATTTGGAATTGGAGGATTTGTTGAGGGCATCAGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTATAAAGTAGTGGCGGGGCGGGGATCCAGTGCGGGCGCGAGTATTGTAGCTGTAAGAAGACTTAATGATGGTGATGCCGCGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGGCCATTGGTAGGGTTCACCATCCCAACATCGTACGGTTGAGAGCTTATTATTATGCAACTGATGAGAAATTATTGGTCACTGATTTCATCAAGAATGGAAGCTTGCACTCTTCTCTACATGGAAGTCCTTCCAGTTCTTTCTTACCTCTGCCATGGTCTGCCAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGACTTTGGTGCTCGGAAATACATACATGGAAACATTAAATCGACAAAAATCCTTCTCGACGACGATTTCGAGCCTTACATTTCAGGTTTTGGACTCGGTCGCCTTGGCCAAGGAGCACCTAAGTTCACTGGAACCTCTTCCAAGAAGTTGAGTTCAAACCAGAATATGATAAGCTCAATCATGGGGCCAAGCATTTCAACTCCCTCAGCAATGTACTTGGCGCCGGAGGTTCGGGAGTTTGGAGGGAAGTACACGCAGAAATGTGACGTGTACTCGTTCGGCATCGTGCTTCTAGAACTTTTGAGCGGTAGATTGCCGGATGCAGGATCGGAAAATGATGGGAAGGGGTTGGAATGTTTCGTGAGAAAGGCGTTTCAAGAAGAGCGCCCCTTGACCGAGGTTATAGACCCTGCGCTTGTGCCTGAAATTTATGCGAAGAAACAAGTGGTTTCGACGTTTCACATTGCACTGAATTGCACAGAGCTTGATTCCGAGCTGCGTCCGAGAATGAGAACGGTGTCGGAGAGTCTCGATCAAATCAAATCTCAGTGA 1953 51.51 MPPFPSFFLLTFFSFFLSFTSSLNSDGLSLLALKAAIESDPSHILESWSEFDSTPCHWPGIVCTLDRVTQLSLPNKGLTGYIPSELGLLDSLRRLTLAFNNFSKPIPSHLYNATNLVVLDLSHNSLSGSLSDQIGDLRKLRHLDLSSNALNGSLPNRLTDLTDLVGTLNLSYNRFSGEVPPCFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTLCPEAQNPNVFPENPQNPKSLNPNFPGYGGRRGSSGGGVAGSAAVAVVSSIFAVVGAVSLTVWWFRRKAVVGRLEEGKTGKGSPEGESCGELEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDGDAALTFKDFENEIEAIGRVHHPNIVRLRAYYYATDEKLLVTDFIKNGSLHSSLHGSPSSSFLPLPWSARLKIAQGAARGLAYIHDFGARKYIHGNIKSTKILLDDDFEPYISGFGLGRLGQGAPKFTGTSSKKLSSNQNMISSIMGPSISTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGRLPDAGSENDGKGLECFVRKAFQEERPLTEVIDPALVPEIYAKKQVVSTFHIALNCTELDSELRPRMRTVSESLDQIKSQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22626401 22631589 - Lsi01G019040.1 Lsi01g01904 654562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01904 650 Gene3D Phosphorylase Kinase; domain 1 327 426 - -
Lsi01g01904 650 SUPERFAMILY L domain-like 25 230 - -
Lsi01g01904 650 Gene3D Ribonuclease Inhibitor 166 234 IPR032675 -
Lsi01g01904 650 Gene3D Ribonuclease Inhibitor 23 165 IPR032675 -
Lsi01g01904 650 ProSiteProfiles Protein kinase domain profile. 345 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01904 650 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lsi01g01904 650 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Lsi01g01904 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 650 - -
Lsi01g01904 650 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 650 - -
Lsi01g01904 650 Pfam Protein tyrosine and serine/threonine kinase 351 643 IPR001245 GO:0004672|GO:0006468
Lsi01g01904 650 SUPERFAMILY Protein kinase-like (PK-like) 350 644 IPR011009 -
Lsi01g01904 650 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Lsi01g01904 650 Pfam Leucine Rich Repeat 167 186 IPR001611 GO:0005515
Lsi01g01904 650 PRINTS Leucine-rich repeat signature 116 129 - -
Lsi01g01904 650 PRINTS Leucine-rich repeat signature 137 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01904 Lsi-Chr1:22626401 Lsi04g00668 Lsi-Chr4:6110513 7.35E-170 dispersed
Lsi01g01904 Lsi-Chr1:22626401 Lsi04g00224 Lsi-Chr4:2329328 8.51E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83310 PF07714 PK_Tyr_Ser-Thr 8.80E-25 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01904 - - bhj:120074581 1135.17