Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01918 ATGAATGCTACTGAAGTACAGAGCTCACTCTCACTCCCTCCCATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTCTTTGGCCTTCGCTTTCTTCATTTTGGGTTCTTCTTCCTCTGAGGAAACGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAGCAAACTCTCTCTCGGATTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGTCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCCATTTGTGAACTACCTCGTTTGACTCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGGACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTTGGAAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGAATCTACAAATTCTCAATCTCAGAAGTAACTTGATTTCTGGTACAATTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTCTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGAGAAGCTTGAGGAGCTTTGGCTTCACAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGTTTGAGTGTTTTGGATCTTTCCCAAAACAATCTCACTGGAAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTCGATGTATCTGAGAACAAACTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGGGATTTTCCTAAACCTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCAATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGCTTTTCAAGTAAAATACCCCGGGGTCTCGGGTCAATTCAAAGCTTATACCGATTCTCTGTGTCGCTCAATCGCTTTTATGGTGAATTGCCACCAAACTTCTGTGATTCTCCATTAATGAGTATAATTAATCTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCTGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAAGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCAATCCCTCAAGGACTCGAAAACTTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCAACTATCAGGCGCTGTTCCGTTCTCTTTGATTTCGGGGCTACCAGCTTCATTTCTGCAGGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAAGGCCATCCAACAAAACATATGTATGGACTAAACAAAATGACATGTGCCCTCATCTCTCTAGCTTGTATTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCAAAATCCCGAGTCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGATCTTGGGGATGAATGAGAAAACTGCTCAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCGAGCCGTGAACTGATCGCTGTTAAGAAGCTCGTTAATTTTGGGAGTCGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATTCTGGGATTTTGCCATTCTGATGATGCCATTTTTCTGATATATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAAGGACTATGCCCCACATTTACTTCATCGAAACGTCAAATCGTCGAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCACGGATTTTGCTCTTCACCATATCGTTGGAGAGCCGGCATTTCACTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTATATTGCACCAGAATATAAATACAACAAAAAAGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAACTGGTGACTGGTAGACAAGCCGAGCGATCGGAATCAACGGAGGACTCTCTCGACGTCGTCCAGTGGGTCAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCTTGGACCCAAGCATCTCGGAGCACTCTCAACAACAGATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATGATGCCTGAAAAACGACCGTCGATGCTCGAAGTCGCTAAGGCCCTTCAACTGATCGGCTCGACAACGAACCATCACGATGCAGCCTTCTCGGCTGCCGAGGAATCTCCGAATGTGGATCTTCCGACGACGGACAAAGAAATCATACCGGAGAAGATTGACGATGAAGAGATCAAAGAGCCTTTGATTCATTGCGAGCTTTGCGATGCGGAAATTGTTCATAAACTTGCTCAGGTTCTTCTTCCTGGATTGTCCACCGCTTGCGTCGATAATACGAGTGGCGATATCTTTCGAACCCCTGGTTCAGTGGCTGCCGAAATGAGGAAAGAAATGGTGGATTATCTTACCATGAGGAGCGAAACTTGTGTTGCTGAATCTATAATTTTAGAGAATGCGCCCGATGCTGAGGTATCTGATCATCCTTACGATATCATCTCTGATTTTGTTGAAGATTTTGCTGCTACGAAGAGAAATTTGTTTAGTAGAGTTTCAGGATGGGTTCTTAGTGAGAAAAGAGAGGATAAGATAGATGATTTTGTTCAGGAAATGGACGTTAATGGCTTTTGGCCACTTGATAGGAGAGAAGCAATTGCTCAGGTTTTGCTTAAGAATGTTGACTTTAAGAGTGAGTTTCATTGTGATATGAAATTTCACTCTGTAGAAGAACTAGCTGAGCATGTTGAAAACTGTGGGTTTAGGTCCTTAACTTGCACAAATGAAGGCTGCACTGCAAGATTTTGTGCAAGCCACGCAGAACAGCATGATTCCATCTGCCCCTTCAAGATAATTTCATGTGAACAGAAGTGTTCTGCCTTTATTTTGAGACGTGAAATGGACCGCCATTGCATAACTGTTTGTCCAATGAAGCTTGTGAATTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACTGTTTGATAGCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCACATTCTTCATTCTATACACAAGGAAGCCAATGAAGAGACTCTTATATATAGACGACAACAGCTTCAAGAGCCATCATCACTTGACCACCTTAGAGGGCTTCAAAACTTGAGATTGTTAACCTTGAAAATCAAAGAAATGGATTCTAAGCTAGGACCATTAGTAGTCATCTGCAAGGTCGAGGACACAGAAGAAGCGAAGGATGGCTCTGACAAAAGTGACGAAGAGAAGGAGGCCTCTAATGCAACTGAAGACGCCAAGGATGCCTCTAATGCAACTGAAGACGCCAAGGATGCCTCTAATGCAACTGAAGACGCCAAGGATGCCTCCAATGCAACTGAAGACGCCAAGGATGCCTCTAATGCAACCGAAGAAATGAAGGACATGTCTAATGGAACGGAAGAAACAAAGGATGCCTCTATTGCAACTGAAGAAAGGAAGGATGTGTCTACTGCAATTGAAGAAAGGGAAGTCATGTCTAGTGCAATTGAAGAAACGAAGGACGCTTCTAAGACAACTGGAGAAGCGAAGGATGCTTCTAATGAAAAAGAAGAAGCCAGTGACACTTCTAATGAAGAAGAAGAAACCAAGGATGCTTCTAATGAAGAAGAAGAAACCAATGATGCTTCTAATGAAAAAGAAGAAACGAAAGATGCGTCAAATTCAACCGAAGAAACAAAGGATGCTTCTCATGCAAAGGAAAAGATGAAGGATGATTCTGATTCTGATTCAAAGGAAGAAATGAAGAATGCTTCTGATGTAGAGGAAGAAATGAAGGATGATTCTGATGCATTGGAAGGAAAGAAGGATGATTCTGATTCAGAGGAAGAAAAGAAGGATGATTCTGATGCAAAGGAGGAGGAAGTGAAGAAAGAAATTGAAGAAAGGAAGCAGGCTTCCGATGGAATTGAAGAAAAGAATGGTATCTCAAATCCACCTGAAGAAGAAACCAAGAGTGCTTCAAATGTAGTAAGAAATGATCCAGATGAAGCTGAAAGATAA 4554 42.29 MNATEVQSSLSLPPMASPFKPPLLLSLAFAFFILGSSSSEETTLLTFKASIKDSANSLSDWVSSSQTHFCNWTGISCVNSSPSLLSVSAIDLQGLNLSGEISSSICELPRLTHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDFGKNHIEGKIPEGIGALKNLQILNLRSNLISGTIPSVVFHNLTELLVLDLSENSYLLSDIPSEIGKLEKLEELWLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKPLWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIQSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPELKNCKKLVSLSLASNSLTGGIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTKHMYGLNKMTCALISLACILGVLSLAAGFILYYRSYKPKSRVDNWHSVYFYPLRISEHELILGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHKDYAPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGEPAFHSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTEDSLDVVQWVRRKVNIANGASQVLDPSISEHSQQQMLEALDIALQCTSMMPEKRPSMLEVAKALQLIGSTTNHHDAAFSAAEESPNVDLPTTDKEIIPEKIDDEEIKEPLIHCELCDAEIVHKLAQVLLPGLSTACVDNTSGDIFRTPGSVAAEMRKEMVDYLTMRSETCVAESIILENAPDAEVSDHPYDIISDFVEDFAATKRNLFSRVSGWVLSEKREDKIDDFVQEMDVNGFWPLDRREAIAQVLLKNVDFKSEFHCDMKFHSVEELAEHVENCGFRSLTCTNEGCTARFCASHAEQHDSICPFKIISCEQKCSAFILRREMDRHCITVCPMKLVNCPFHNLGCQSPVPYCLIAQHCSESFDSHLLHILHSIHKEANEETLIYRRQQLQEPSSLDHLRGLQNLRLLTLKIKEMDSKLGPLVVICKVEDTEEAKDGSDKSDEEKEASNATEDAKDASNATEDAKDASNATEDAKDASNATEDAKDASNATEEMKDMSNGTEETKDASIATEERKDVSTAIEEREVMSSAIEETKDASKTTGEAKDASNEKEEASDTSNEEEETKDASNEEEETNDASNEKEETKDASNSTEETKDASHAKEKMKDDSDSDSKEEMKNASDVEEEMKDDSDALEGKKDDSDSEEEKKDDSDAKEEEVKKEIEERKQASDGIEEKNGISNPPEEETKSASNVVRNDPDEAER 1517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23716845 23730688 - Lsi01G019180.1 Lsi01g01918 654576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01918 1517 Coils Coil 1256 1276 - -
Lsi01g01918 1517 Gene3D Phosphorylase Kinase; domain 1 616 685 - -
Lsi01g01918 1517 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Lsi01g01918 1517 Gene3D Transferase(Phosphotransferase) domain 1 686 899 - -
Lsi01g01918 1517 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 21 889 - -
Lsi01g01918 1517 ProSiteProfiles Protein kinase domain profile. 609 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01918 1517 ProSiteProfiles Zinc finger TRAF-type profile. 1116 1167 IPR001293 GO:0008270
Lsi01g01918 1517 Gene3D Ribonuclease Inhibitor 279 541 IPR032675 -
Lsi01g01918 1517 ProSiteProfiles Leucine-rich repeat profile. 472 495 IPR001611 GO:0005515
Lsi01g01918 1517 SUPERFAMILY L domain-like 219 530 - -
Lsi01g01918 1517 SMART LRR_typ_2 279 303 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 254 278 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 133 156 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 205 230 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 470 494 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 108 132 IPR003591 -
Lsi01g01918 1517 SMART LRR_typ_2 180 204 IPR003591 -
Lsi01g01918 1517 Pfam Protein kinase domain 618 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01918 1517 MobiDBLite consensus disorder prediction 1247 1517 - -
Lsi01g01918 1517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1180 IPR013083 -
Lsi01g01918 1517 Coils Coil 1459 1490 - -
Lsi01g01918 1517 PANTHER OSJNBB0022F23.6 PROTEIN 21 889 - -
Lsi01g01918 1517 MobiDBLite consensus disorder prediction 1247 1370 - -
Lsi01g01918 1517 SUPERFAMILY Protein kinase-like (PK-like) 618 889 IPR011009 -
Lsi01g01918 1517 SUPERFAMILY L domain-like 38 309 - -
Lsi01g01918 1517 MobiDBLite consensus disorder prediction 1387 1496 - -
Lsi01g01918 1517 Gene3D Ribonuclease Inhibitor 37 201 IPR032675 -
Lsi01g01918 1517 MobiDBLite consensus disorder prediction 1371 1386 - -
Lsi01g01918 1517 Gene3D Ribonuclease Inhibitor 202 278 IPR032675 -
Lsi01g01918 1517 Pfam TRAF-type zinc finger 1116 1174 IPR001293 GO:0008270
Lsi01g01918 1517 Coils Coil 1360 1403 - -
Lsi01g01918 1517 ProSiteProfiles Leucine-rich repeat profile. 134 156 IPR001611 GO:0005515
Lsi01g01918 1517 Pfam Leucine rich repeat 448 506 IPR001611 GO:0005515
Lsi01g01918 1517 Pfam Leucine rich repeat 134 193 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01918 Lsi-Chr1:23716845 Lsi05g00800 Lsi-Chr5:11817984 1.52E-142 dispersed
Lsi03g01955 Lsi-Chr3:30951568 Lsi01g01918 Lsi-Chr1:23716845 2.60E-07 dispersed
Lsi05g01382 Lsi-Chr5:21710782 Lsi01g01918 Lsi-Chr1:23716845 9.06E-06 dispersed
Lsi01g01917 Lsi-Chr1:23712412 Lsi01g01918 Lsi-Chr1:23716845 5.56E-07 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83311 PF00069 Pkinase 6.50E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01918 - - csv:101222175 1646.33