Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01928 ATGGTCCATTCTCTCTCCTCCCATCTTCAACCATTCTCTCTCTTTCTCTCTCTTCAATTTCATCTTCTTCAATTCCTTCTTGATCTTCAATTCCCCATGGGAGATCCATGTTCAAACTCATTAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTCTCCCCATCACAACCTTCAAATCCTACCCCATACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCCGAACCCGCCTCCGCCTCCGTCTCCCCCGCTCCGAGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAACGGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAAGAAGAGTCGGTGACCGTAGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAAATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGACAGTACTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTGTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAGTATAGAAAAGGTCCCGAGTCCCTCCGAGGCACCCAACCGACGGGAATGCTACGGCTTCCTTGCTATTGCTGCGCACCGGGGTGCCGCAACAACATAGACCACCCTCGAGCCAAACCATTGAAGGACTTTAGAACCCTGCAAACGCATTACAAGCGCAAGCACGGTCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTCGCGGTGCGGGGGGACTGGCGGACACACGAGAAGAATTGTGGTAAGCTTTGGTATTGCATTTGTGGCTCGGATTTTAAACACAAGCGCTCCTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCCTACGGTGGGGGCGGGATCGATGGGCTCGGAGACGAGGAAGATGAGCCCGCTTCGGAAGTCGAGCAGGATAACGATGAGTGA 1083 51.15 MVHSLSSHLQPFSLFLSLQFHLLQFLLDLQFPMGDPCSNSLASVLKFNSLHHHFSPSQPSNPTPYLNMSHNCFSYPYPNPPPPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGLGDEEDEPASEVEQDNDE 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24228033 24231292 - Lsi01G019280.1 Lsi01g01928 654586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01928 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 301 IPR013087 -
Lsi01g01928 360 PANTHER ZINC FINGER PROTEIN WIP2 39 359 IPR043584 GO:0003700|GO:0010468
Lsi01g01928 360 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 39 359 - -
Lsi01g01928 360 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Lsi01g01928 360 MobiDBLite consensus disorder prediction 148 170 - -
Lsi01g01928 360 MobiDBLite consensus disorder prediction 101 121 - -
Lsi01g01928 360 Gene3D Classic Zinc Finger 196 219 - -
Lsi01g01928 360 MobiDBLite consensus disorder prediction 342 360 - -
Lsi01g01928 360 SUPERFAMILY beta-beta-alpha zinc fingers 266 301 IPR036236 -
Lsi01g01928 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Lsi01g01928 360 SMART c2h2final6 197 219 IPR013087 -
Lsi01g01928 360 SMART c2h2final6 281 301 IPR013087 -
Lsi01g01928 360 MobiDBLite consensus disorder prediction 338 360 - -
Lsi01g01928 360 Gene3D Classic Zinc Finger 259 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01928 Lsi-Chr1:24228033 Lsi03g01705 Lsi-Chr3:28423079 4.06E-120 dispersed
Lsi01g01928 Lsi-Chr1:24228033 Lsi02g02581 Lsi-Chr2:32280466 8.07E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24708 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01928 - - bhj:120074233 592.038