Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01935 ATGGGAGACGGCAATAACACCAACAGAGGCCTTGTCTCGGCCAACGCCGCCAATAGGAACAACAACAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATAAAAAAATTCAAGCAATCCAAGGACGGTGATGGCGTCTCTCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACATGACCTCTATGAAATCATTAGACATCACCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCATTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGGGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGGTATCCCTGATAAAATCATTTAG 720 44.17 MGDGNNTNRGLVSANAANRNNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGIPDKII 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24633242 24635582 - Lsi01G019350.1 Lsi01g01935 654593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01935 239 ProSitePatterns Protein kinases ATP-binding region signature. 43 71 IPR017441 GO:0005524
Lsi01g01935 239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lsi01g01935 239 MobiDBLite consensus disorder prediction 1 30 - -
Lsi01g01935 239 Gene3D Transferase(Phosphotransferase) domain 1 120 234 - -
Lsi01g01935 239 SMART serkin_6 37 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01935 239 Pfam Protein kinase domain 37 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01935 239 PANTHER CELL DIVISION PROTEIN KINASE 25 233 - -
Lsi01g01935 239 PANTHER CYCLIN-DEPENDENT KINASE E-1 25 233 - -
Lsi01g01935 239 SUPERFAMILY Protein kinase-like (PK-like) 32 232 IPR011009 -
Lsi01g01935 239 Gene3D Phosphorylase Kinase; domain 1 20 119 - -
Lsi01g01935 239 ProSiteProfiles Protein kinase domain profile. 37 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01935 Lsi-Chr1:24633242 Lsi04g00138 Lsi-Chr4:1583870 3.32E-45 dispersed
Lsi01g01935 Lsi-Chr1:24633242 Lsi08g01606 Lsi-Chr8:24018415 8.31E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83314 PF00069 Pkinase 1.70E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01935 K02208 - csv:101203984 448.743