Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01940 | ATGACATGGAGGTGTGATATATTTTTCTGCTTCTGCTTTGTTTCGGACTCTCTTGACTGGCTTTTGAACTTTAGTGCCCGAATGGCCACACATTGTGCTCAAGCTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCACGAACTCGGGAACATTAGGTGCTTGGCACTGGAGAAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCTGTCTCTTGTTGCACATCTTAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCATTTTTACGGTTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATTCCGAGGGGCATCCGTGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACGGGTCGAATATGGAAAGAAGAATGA | 711 | 46.27 | MTWRCDIFFCFCFVSDSLDWLLNFSARMATHCAQAARSELATVARPVVTNSGTLGAWHWRSKLKHEQHCRYRPYNCPYAGSECSVTGDILSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24862097 | 24863512 | + | Lsi01G019390.1 | Lsi01g01940 | 654598 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01940 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED | 55 | 236 | - | - | |
Lsi01g01940 | 236 | SUPERFAMILY | TRAF domain-like | 61 | 233 | - | - | |
Lsi01g01940 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 94 | IPR013083 | - | |
Lsi01g01940 | 236 | Pfam | Seven in absentia protein family | 46 | 229 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Lsi01g01940 | 236 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 55 | 236 | - | - | |
Lsi01g01940 | 236 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 95 | 229 | IPR008974 | GO:0005515 | |
Lsi01g01940 | 236 | ProSiteProfiles | Zinc finger SIAH-type profile. | 27 | 101 | IPR013010 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01940 | Lsi-Chr1:24862097 | Lsi04g00034 | Lsi-Chr4:495319 | 6.72E-116 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01940 | K04506 | - | pop:7479519 | 364.77 |