Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01940 ATGACATGGAGGTGTGATATATTTTTCTGCTTCTGCTTTGTTTCGGACTCTCTTGACTGGCTTTTGAACTTTAGTGCCCGAATGGCCACACATTGTGCTCAAGCTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCACGAACTCGGGAACATTAGGTGCTTGGCACTGGAGAAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCTGTCTCTTGTTGCACATCTTAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCATTTTTACGGTTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATTCCGAGGGGCATCCGTGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACGGGTCGAATATGGAAAGAAGAATGA 711 46.27 MTWRCDIFFCFCFVSDSLDWLLNFSARMATHCAQAARSELATVARPVVTNSGTLGAWHWRSKLKHEQHCRYRPYNCPYAGSECSVTGDILSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24862097 24863512 + Lsi01G019390.1 Lsi01g01940 654598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01940 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 55 236 - -
Lsi01g01940 236 SUPERFAMILY TRAF domain-like 61 233 - -
Lsi01g01940 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 94 IPR013083 -
Lsi01g01940 236 Pfam Seven in absentia protein family 46 229 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi01g01940 236 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 55 236 - -
Lsi01g01940 236 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 95 229 IPR008974 GO:0005515
Lsi01g01940 236 ProSiteProfiles Zinc finger SIAH-type profile. 27 101 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01940 Lsi-Chr1:24862097 Lsi04g00034 Lsi-Chr4:495319 6.72E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01940 K04506 - pop:7479519 364.77