Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01942 ATGTTTAACAACACATCGAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATTTCGTAAAAAATCCGCCGGATTCTCTGCGAAGAATCGATCAAATTGCGAAAAACGGTGTAAACTCCAGCAATCCGACAGCAACAGTGAACTCCGAGATTCATTCCGGGCAGCCAGGGGGGTCAATTGCACCGATTCCGAACAGCACATCGGCACCAAACTTGAAGAACCACAACAATAACAACAACAACAACTCTGGTTTCATGCCCGCGAAGGGCGGTGGCTGTGGAAATAATTATCGTTGCGACAGCATGGAGACACCGGGAGTGGTGATAAAGCCGCACACGGGCGGAGATGTGCGGTGGGACGCCATTAACATGGTGTCGAAAGGTGGGGCTTTGAATCTGAGCCATTTCCAGCTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGTGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTTGCTATGAAAGTGATGGATAAAGCTTCATTGGCAAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTTTATTCCTATTTTGAAACTGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCATTAGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCAGAGAACCTCTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGTTCTATGCATCAGAGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCAGAGAACCTCTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCACCACCGGCAATACCGGCACCAACGGCGGAGGCAGCGGCGGCATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAACCTTCCAATTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCCAAATCCGACTTCGGCCTTTTCGTTGGCGGCTCCCTCCCCGAACTCATGGCCGAACCTACCAACGTCAGATCTATGTCCTTTGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGACACGGCAGCGCCGTCGACTGGTGGACCTTCGGGATCTTCCTCTACGAGCTTCTTCACGGAACTACGCCTTTCAAAGGATCTGGAAACAGAGCTACTCTGTTCAACGTCGTCGAACAACCGCTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGGGATCTCATCAGAGGACTCCTCGTTAAGGAGCCGCAAAAGAGAATCGCGTATCGGAGAGGAGCAACTGAGATTAAACAGCATCCCTTCTTCGATGGAGTGAATTGGGCGTTGGTTAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCAGTCGATTTCTCGCAGTTCGCAAGAAAGAAGAGCAGCACCGGAGTGGTGGAAGACAAGAAGCCGATGGAAGTACCGGCGGCTACGGCCACAGCCACGGCGACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGCTAGCGATCCCAATTATGTGGATTTTGAGTATTTCTAG 1815 50.19 MFNNTSKGENDSHGGGMNFVKNPPDSLRRIDQIAKNGVNSSNPTATVNSEIHSGQPGGSIAPIPNSTSAPNLKNHNNNNNNNSGFMPAKGGGCGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVLCIREYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSTTGNTGTNGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKSSTGVVEDKKPMEVPAATATATATPAAAENSSPSTASDPNYVDFEYF 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24956881 24960580 - Lsi01G019420.1 Lsi01g01942 654600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01942 604 Gene3D Phosphorylase Kinase; domain 1 134 219 - -
Lsi01g01942 604 Gene3D Transferase(Phosphotransferase) domain 1 297 366 - -
Lsi01g01942 604 SMART serkin_6 136 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01942 604 SUPERFAMILY Protein kinase-like (PK-like) 133 289 IPR011009 -
Lsi01g01942 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Lsi01g01942 604 SUPERFAMILY Protein kinase-like (PK-like) 303 574 IPR011009 -
Lsi01g01942 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lsi01g01942 604 MobiDBLite consensus disorder prediction 37 83 - -
Lsi01g01942 604 Pfam Protein kinase domain 378 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01942 604 Pfam Protein kinase domain 303 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01942 604 Pfam Protein kinase domain 137 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01942 604 MobiDBLite consensus disorder prediction 580 596 - -
Lsi01g01942 604 MobiDBLite consensus disorder prediction 559 599 - -
Lsi01g01942 604 ProSiteProfiles Protein kinase domain profile. 136 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01942 604 CDD STKc_phototropin_like 134 549 - -
Lsi01g01942 604 PANTHER FLIPPASE KINASE 1-RELATED 68 298 - -
Lsi01g01942 604 PANTHER FLIPPASE KINASE 1-RELATED 296 604 - -
Lsi01g01942 604 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 68 298 - -
Lsi01g01942 604 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 296 604 - -
Lsi01g01942 604 Gene3D Transferase(Phosphotransferase) domain 1 220 289 - -
Lsi01g01942 604 MobiDBLite consensus disorder prediction 1 24 - -
Lsi01g01942 604 Gene3D Transferase(Phosphotransferase) domain 1 403 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01942 Lsi-Chr1:24956881 Lsi05g02229 Lsi-Chr5:28852635 0 dispersed
Lsi01g01942 Lsi-Chr1:24956881 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83315 PF00069 Pkinase 1.00E-21 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01942 - - csv:101204230 853.588