Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01995 ATGATGGTTAAGGAAAATTTGCTGCAGAGAGTAGATGACAATGCTAAAGAGAATGATTGTTCGACTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGCTAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTGTGGAAGCAAGGAAAAGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAGAATGTTGATGGTGGTTCTGTGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTCTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCATGAAGATGCATTAGTGGAACTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAATGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTGTTGCGGAAAATATTAGAACCGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAAGCTAATCCTATGCAGACTATTGCTAGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCGTTGTGGTTCAGTCCTCATAATTATAGTAGCAACATTAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTGAAACAATTTTATTCATTAGTAATGTATCGACGGGTGGAATAGACTAA 1020 42.75 MMVKENLLQRVDDNAKENDCSTIGNEDLGSQSRHSVGKESGASCRVCQCIESDRRGDAVLGFLGITPPIVEARKSDGDSKPEKQSAENVDGGSVLKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCVAENIRTDDFRKVVSSLKEYEALRERTVSGEANPMQTIASTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNINSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFETILFISNVSTGGID 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26713127 26727860 + Lsi01G019950.1 Lsi01g01995 654653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01995 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 325 - -
Lsi01g01995 339 PANTHER ZINC FINGER, RING-CH-TYPE 1 325 - -
Lsi01g01995 339 Pfam RING-variant domain 130 167 IPR011016 GO:0008270
Lsi01g01995 339 MobiDBLite consensus disorder prediction 72 94 - -
Lsi01g01995 339 ProSiteProfiles Zinc finger RING-CH-type profile. 110 174 IPR011016 GO:0008270
Lsi01g01995 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 176 IPR013083 -
Lsi01g01995 339 MobiDBLite consensus disorder prediction 21 37 - -
Lsi01g01995 339 MobiDBLite consensus disorder prediction 15 37 - -
Lsi01g01995 339 SMART ringv_2 127 168 IPR011016 GO:0008270
Lsi01g01995 339 SUPERFAMILY RING/U-box 131 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01995 Lsi-Chr1:26713127 Lsi02g01315 Lsi-Chr2:17603512 4.52E-09 dispersed
Lsi01g01995 Lsi-Chr1:26713127 Lsi03g00338 Lsi-Chr3:4021559 1.61E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01995 - - csv:101218157 610.912