Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g02067 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGAGCTAACCCTTCCGATATGGAGACCATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTCTCAAATCCCCCTGAAACCCTAGCTTCTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTGAACATGCTTCCCTTACTCCGCCGTACAATTCTCCACTCCCAACACTGCCTTCTAATGACCTCATTGCTGCCATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGACAAGGCAAAGAAACGCCAGGAGCTGCTTACTGGAAAGTCACGGTCCGACGAGAATGATCCTAAGAGAAAACAAGGAGACGATGTTTTAGATTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAATTACCTGATAGGCCAGTCACTACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTACCGGAGGACCTCAGAAGGCTTATCATTATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCGCAAAAAAAGGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAAAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCAACGAGCACGAGACCAGTTGAAACCGAAGATTCTGCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATGAACGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTCGGGAGGTGATGAATCTGCCAATTACTACGCCATGTGCCCATAACTTCTGCAAGTCATGCTTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGATGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGACAGATATATCAGATTTTCTACAGAATCTTCAGGTGAATAGAGATTTGTTGGATGTGATCGAGTCGTTGAAAGGTAAGCTTGAAGAAGGGGATGAATCTGAGAAGCTTTGTGAAGAAGAGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCTGTGATTTGA 1926 45.12 MAQVSQLPCDGDGICMLCRANPSDMETITCKTCVTPWHVDCLSNPPETLASTLQWDCPDCSPPPEHASLTPPYNSPLPTLPSNDLIAAIRAIEADSSLTDGDKAKKRQELLTGKSRSDENDPKRKQGDDVLDLFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVTGGPQKAYHYVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSTRPVETEDSASGKRSRRKIRQSHDMNVRERLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGWSLRSRKNVMTCPCCPTDISDFLQNLQVNRDLLDVIESLKGKLEEGDESEKLCEEEIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28959581 28967513 + Lsi01G020670.1 Lsi01g02067 654725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g02067 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 600 IPR013083 -
Lsi01g02067 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 207 IPR013083 -
Lsi01g02067 641 Coils Coil 596 616 - -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 445 468 - -
Lsi01g02067 641 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 617 641 - -
Lsi01g02067 641 SMART PHD_3 14 61 IPR001965 -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 99 127 - -
Lsi01g02067 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Lsi01g02067 641 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Lsi01g02067 641 SMART G9a_1 263 420 IPR003105 -
Lsi01g02067 641 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 627 IPR045134 -
Lsi01g02067 641 Gene3D - 239 435 IPR036987 -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 424 497 - -
Lsi01g02067 641 Pfam RING-type zinc-finger 512 566 IPR027370 -
Lsi01g02067 641 ProSiteProfiles Zinc finger RING-type profile. 512 568 IPR001841 -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 424 438 - -
Lsi01g02067 641 Pfam SAD/SRA domain 271 419 IPR003105 -
Lsi01g02067 641 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Lsi01g02067 641 SMART ring_2 140 178 IPR001841 -
Lsi01g02067 641 SMART ring_2 512 568 IPR001841 -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 596 641 - -
Lsi01g02067 641 CDD RING-HC 140 178 - -
Lsi01g02067 641 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Lsi01g02067 641 Pfam Zinc finger, C3HC4 type (RING finger) 140 178 IPR018957 GO:0046872
Lsi01g02067 641 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Lsi01g02067 641 SUPERFAMILY RING/U-box 131 186 - -
Lsi01g02067 641 MobiDBLite consensus disorder prediction 602 616 - -
Lsi01g02067 641 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 627 - -
Lsi01g02067 641 SUPERFAMILY RING/U-box 505 593 - -
Lsi01g02067 641 SUPERFAMILY PUA domain-like 242 439 IPR015947 -
Lsi01g02067 641 ProSiteProfiles Zinc finger RING-type profile. 140 179 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02067 Lsi-Chr1:28959581 Lsi11g00044 Lsi-Chr11:499490 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g02067 K10638 - csv:101220457 1191.79