Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g02077 ATGGCGGAGGCAGCGGCCGCGGGTTTCTTGCACAAGCTGTTAACCGGACGGTGGTTAATGCTATTCGCATCACTAACCATCATGGCAATGAACGGATCAGGCTACATGTTCGGGCTCTACTCCGCCCGCATCAAATCCATTTTTCGTTACGATCAGTCGGCTCTTAATTTTATCAGCTTCTTCAAGGACTTGGGTGGCAATCTTGGGGTGGTTTCCGGCCTCCTCTACGAGGTCGCACCACCGTGGCTGGTTCTCTCTGTTGGTGCCGTCCTCAACTTTTTCGCCTACTTCATGCTCTGGTCGGCGGTTTCTGGCCGGACCGCCGCACCGGGGCTGTGGTTGATGTGTGTTTATATGGGCGTTGCTGCTAACTCATTGTCTTTTGCTAATACGGCGGCTTTGGTTACTTGTGTTCGTAACTTTCCTCTTCATCGTGGCTGCCTTCTTAAAGGATACATAGGTTTGAGTGGTGCAATAATGACGCAACTTTACCATGCCATGTATGGAGATGACGAACCAGAAGGCCTTATTTTGATGATTGCTTGGCTCCCATCTGCCATTTCATTAGCTTCCCTTCCATTCATTCGAATCATAAACACCATCAACCATCAACCACCAAGCCAACAACCTCAAACCATTCTATACCCTTCTTTACATATCCCTCGCCCTTGCCACTTCTCTCATTGCCATTACCATCCCTCAAACTAA 708 49.15 MAEAAAAGFLHKLLTGRWLMLFASLTIMAMNGSGYMFGLYSARIKSIFRYDQSALNFISFFKDLGGNLGVVSGLLYEVAPPWLVLSVGAVLNFFAYFMLWSAVSGRTAAPGLWLMCVYMGVAANSLSFANTAALVTCVRNFPLHRGCLLKGYIGLSGAIMTQLYHAMYGDDEPEGLILMIAWLPSAISLASLPFIRIINTINHQPPSQQPQTILYPSLHIPRPCHFSHCHYHPSN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29277894 29279793 - Lsi01G020770.1 Lsi01g02077 654735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g02077 235 Pfam Nodulin-like 17 204 IPR010658 -
Lsi01g02077 235 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 204 - -
Lsi01g02077 235 PANTHER FACILITATOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g02077 - - - csv:101220925 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02077 Lsi-Chr1:29277894 Lsi04g00096 Lsi-Chr4:1102253 4.97E-78 dispersed
Lsi01g02077 Lsi-Chr1:29277894 Lsi08g00691 Lsi-Chr8:15212551 1.06E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g00780 . 1 725 Nodulin-like Gene Family AT4G19180 58.7 5.3e-241 830.9
Lsi04g01840 . 24 306 Nodulin-like Gene Family AT3G45870 65.0 8.7e-96 347.1
Lsi02g01544 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 3.8e-115 411.8
Lsi07g01289 . 2 360 Nodulin-like Gene Family AT5G47470 56.9 5.6e-101 364.8
Lsi03g01416 . 4 364 Nodulin-like Gene Family AT5G40230 50.7 3.2e-93 339.0
Lsi02g01544 . 10 333 Nodulin-like Gene Family AT5G40230 54.9 9.2e-93 337.4
Lsi03g01416 . 6 364 Nodulin-like Gene Family AT5G40240 50.7 3.8e-91 332.0
Lsi02g01544 . 3 333 Nodulin-like Gene Family AT5G40240 52.6 6.5e-91 331.3
Lsi08g01356 CCT,ECH 66 332 Nodulin-like Gene Family AT3G53210 56.6 2.7e-83 305.4
Lsi01g01401 . 99 364 Nodulin-like Gene Family AT2G37450 59.0 1.9e-84 309.3
Lsi04g00873 . 98 331 Nodulin-like Gene Family AT2G37450 57.7 2.1e-70 262.7
Lsi04g02384 . 83 317 Nodulin-like Gene Family AT2G37450 53.0 8.3e-64 240.7
Lsi01g01401 . 12 364 Nodulin-like Gene Family AT2G37460 65.5 2.5e-125 445.7
Lsi04g00873 . 11 331 Nodulin-like Gene Family AT2G37460 57.6 5.2e-99 358.2
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT2G37460 52.3 4.0e-91 332.0
Lsi08g01356 CCT,ECH 54 444 Nodulin-like Gene Family AT1G75500 72.2 6.3e-161 563.9
Lsi04g01711 CCT,ECH 1 350 Nodulin-like Gene Family AT1G75500 64.6 3.1e-131 465.3
Lsi04g00524 . 12 318 Nodulin-like Gene Family AT1G60050 52.3 5.3e-88 321.6
Lsi01g01401 . 12 332 Nodulin-like Gene Family AT5G13670 53.1 2.3e-91 332.8
Lsi04g00873 . 12 340 Nodulin-like Gene Family AT2G39510 61.7 2.3e-112 402.5
Lsi01g01401 . 13 341 Nodulin-like Gene Family AT2G39510 60.2 1.2e-111 400.2
Lsi02g01668 . 8 331 Nodulin-like Gene Family AT2G39510 57.2 5.4e-109 391.3
Lsi04g02384 . 18 334 Nodulin-like Gene Family AT2G39510 50.4 1.5e-87 320.1
Lsi04g00874 CCT,ECH 8 297 Nodulin-like Gene Family AT2G39510 51.8 2.0e-87 319.7
Lsi02g01665 CCT,ECH 32 315 Nodulin-like Gene Family AT2G39510 52.3 2.5e-82 302.8
Lsi02g01666 . 1 242 Nodulin-like Gene Family AT2G39510 50.4 1.6e-65 246.9
Lsi08g00420 . 19 242 Nodulin-like Gene Family AT4G08290 56.7 1.3e-67 253.4
Lsi02g01665 CCT,ECH 22 203 Nodulin-like Gene Family AT4G08290 52.2 3.5e-44 175.6
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT4G08300 61.6 1.4e-112 403.3
Lsi10g00701 . 33 286 Nodulin-like Gene Family AT5G64700 61.2 3.1e-79 292.0
Lsi10g00702 CCT 4 209 Nodulin-like Gene Family AT5G64700 55.4 3.1e-50 195.7
Lsi03g01630 . 10 332 Nodulin-like Gene Family AT5G07050 65.3 1.2e-119 426.8
Lsi03g01629 . 10 370 Nodulin-like Gene Family AT5G07050 60.8 1.8e-118 422.9
Lsi01g01762 . 10 273 Nodulin-like Gene Family AT5G07050 55.3 2.5e-96 349.4
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT5G07050 50.2 3.4e-85 312.4
Lsi01g01762 . 13 291 Nodulin-like Gene Family AT3G56620 53.0 2.4e-88 322.8
Lsi04g00524 . 13 349 Nodulin-like Gene Family AT1G70260 51.2 7.1e-93 337.8
Lsi11g00654 . 5 311 Nodulin-like Gene Family AT1G09380 53.0 2.0e-95 346.3
Lsi03g01629 . 12 363 Nodulin-like Gene Family AT2G40900 52.6 3.3e-101 365.5
Lsi03g01630 . 12 337 Nodulin-like Gene Family AT2G40900 54.2 1.8e-99 359.8
Lsi01g01762 . 13 286 Nodulin-like Gene Family AT2G40900 54.2 1.3e-89 327.0
Lsi08g01356 CCT,ECH 66 410 Nodulin-like Gene Family AT3G18200 57.1 1.4e-107 386.7
Lsi06g01306 . 23 287 Nodulin-like Gene Family AT3G18200 51.5 1.4e-80 297.0
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT1G44800 60.1 2.7e-113 405.6
Lsi04g01840 . 108 400 Nodulin-like Gene Family AT5G45370 63.6 2.9e-99 358.6
Lsi04g02384 . 12 294 Nodulin-like Gene Family AT1G21890 60.6 2.7e-102 369.0
Lsi03g01630 . 15 308 Nodulin-like Gene Family AT1G21890 51.3 3.4e-81 298.9
Lsi01g01401 . 11 313 Nodulin-like Gene Family AT1G21890 50.3 7.6e-81 297.7
Lsi07g00429 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Lsi07g00763 . 3 417 Nodulin-like Gene Family AT4G19450 67.7 5.4e-150 527.7
Lsi09g01880 . 44 442 Nodulin-like Gene Family AT4G19450 58.0 2.3e-129 459.1
Lsi06g01497 . 7 538 Nodulin-like Gene Family AT1G74780 60.1 1.8e-182 636.0
Lsi06g01498 . 10 527 Nodulin-like Gene Family AT1G74780 58.0 6.4e-172 600.9
Lsi10g00482 CCT 9 540 Nodulin-like Gene Family AT4G34950 70.4 3.6e-221 764.6
Lsi03g00402 . 6 641 Nodulin-like Gene Family AT5G14120 63.6 1.8e-228 788.9
Lsi10g00482 CCT 1 386 Nodulin-like Gene Family AT2G16660 68.8 3.3e-149 525.0
Lsi11g01194 CCT 1 302 Nodulin-like Gene Family AT2G16660 61.8 1.1e-104 377.1
Lsi04g00096 . 14 563 Nodulin-like Gene Family AT2G39210 70.9 1.0e-226 783.1
Lsi04g00097 CCT,ECH 15 572 Nodulin-like Gene Family AT2G39210 67.6 2.1e-219 758.8
Lsi08g00691 CCT,ECH 31 613 Nodulin-like Gene Family AT2G39210 61.7 3.9e-210 728.0
Lsi04g00100 . 3 566 Nodulin-like Gene Family AT2G39210 63.0 2.2e-200 695.7
Lsi03g01994 . 1 555 Nodulin-like Gene Family AT2G39210 61.7 5.1e-194 674.5
Lsi03g00141 . 20 569 Nodulin-like Gene Family AT2G39210 59.6 4.7e-187 651.4
Lsi04g00099 . 3 489 Nodulin-like Gene Family AT2G39210 59.8 7.0e-183 637.5
Lsi03g01999 . 1 577 Nodulin-like Gene Family AT2G39210 56.5 1.0e-181 633.6
Lsi01g01296 . 18 535 Nodulin-like Gene Family AT2G39210 56.2 1.6e-166 583.2
Lsi02g01455 . 16 503 Nodulin-like Gene Family AT2G39210 52.7 5.4e-143 505.0
Lsi01g02076 . 28 259 Nodulin-like Gene Family AT2G39210 60.3 3.7e-75 279.6
Lsi01g02077 . 12 197 Nodulin-like Gene Family AT2G39210 60.3 3.0e-61 233.4
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G39210 72.8 1.6e-49 194.5
Lsi07g00763 . 7 565 Nodulin-like Gene Family AT3G01630 52.1 1.1e-148 523.9
Lsi09g01880 . 50 589 Nodulin-like Gene Family AT3G01630 51.1 4.8e-141 498.4
Lsi03g00402 . 6 477 Nodulin-like Gene Family AT3G01930 61.8 5.4e-161 564.3
Lsi06g01497 . 10 537 Nodulin-like Gene Family AT1G18940 55.6 4.2e-168 588.2
Lsi06g01498 . 7 520 Nodulin-like Gene Family AT1G18940 54.3 4.7e-159 558.1
Lsi06g01497 . 6 539 Nodulin-like Gene Family AT2G34350 56.5 4.5e-162 568.2
Lsi06g01498 . 11 525 Nodulin-like Gene Family AT2G34350 54.5 2.7e-154 542.3
Lsi03g00141 . 15 578 Nodulin-like Gene Family AT2G28120 69.0 2.6e-219 758.4
Lsi04g00096 . 9 568 Nodulin-like Gene Family AT2G28120 62.0 4.0e-196 681.4
Lsi04g00097 CCT,ECH 9 571 Nodulin-like Gene Family AT2G28120 58.8 3.0e-191 665.2
Lsi08g00691 CCT,ECH 29 596 Nodulin-like Gene Family AT2G28120 58.8 3.5e-184 641.7
Lsi03g01994 . 19 563 Nodulin-like Gene Family AT2G28120 59.5 5.3e-180 627.9
Lsi04g00100 . 1 570 Nodulin-like Gene Family AT2G28120 55.9 7.4e-174 607.4
Lsi03g01999 . 19 563 Nodulin-like Gene Family AT2G28120 57.0 1.3e-173 606.7
Lsi02g01455 . 13 517 Nodulin-like Gene Family AT2G28120 57.0 1.5e-163 573.2
Lsi03g00144 . 1 551 Nodulin-like Gene Family AT2G28120 53.8 8.5e-162 567.4
Lsi04g00099 . 1 488 Nodulin-like Gene Family AT2G28120 52.6 7.4e-158 554.3
Lsi01g01296 . 16 535 Nodulin-like Gene Family AT2G28120 55.0 2.6e-155 545.8
Lsi03g00143 . 1 565 Nodulin-like Gene Family AT2G28120 51.5 2.1e-152 536.2
Lsi03g00142 . 4 538 Nodulin-like Gene Family AT2G28120 51.2 5.9e-147 518.1
Lsi01g02076 . 28 261 Nodulin-like Gene Family AT2G28120 58.5 3.9e-74 276.2
Lsi01g02077 . 1 196 Nodulin-like Gene Family AT2G28120 55.3 3.3e-57 219.9
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G28120 68.8 1.0e-45 181.8
Lsi07g00763 . 4 570 Nodulin-like Gene Family AT1G31470 56.9 1.8e-167 586.3
Lsi09g01880 . 50 596 Nodulin-like Gene Family AT1G31470 55.9 3.3e-161 565.5
Lsi08g00551 . 17 217 Nodulin-like Gene Family AT1G76800 68.7 2.4e-68 255.4
Lsi03g00875 . 10 202 Nodulin-like Gene Family AT1G76800 62.7 9.3e-60 226.9
Lsi02g02019 . 35 197 Nodulin-like Gene Family AT1G76800 76.7 1.2e-59 226.5
Lsi03g00875 . 14 202 Nodulin-like Gene Family AT3G25190 68.6 2.4e-64 242.3
Lsi08g00551 . 23 217 Nodulin-like Gene Family AT3G25190 62.6 3.9e-59 224.9
Lsi02g02019 . 42 197 Nodulin-like Gene Family AT3G25190 63.2 1.2e-47 186.8
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT1G21140 73.7 7.5e-73 270.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT1G21140 62.8 2.8e-64 241.9
Lsi02g02019 . 25 203 Nodulin-like Gene Family AT1G21140 69.3 5.5e-60 227.6
Lsi08g00551 . 20 214 Nodulin-like Gene Family AT3G43630 75.9 1.7e-72 269.2
Lsi03g00875 . 7 199 Nodulin-like Gene Family AT3G43630 63.7 3.8e-61 231.5
Lsi02g02019 . 28 203 Nodulin-like Gene Family AT3G43630 70.4 7.2e-60 227.3
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT3G43660 72.7 2.4e-71 265.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT3G43660 61.7 1.2e-62 236.5
Lsi02g02019 . 33 203 Nodulin-like Gene Family AT3G43660 70.2 2.7e-59 225.3