Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00006 ATGGAAAGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACTCCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGCGTTTTCCTCGCAAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTCTTGCTTTGGAGTATTTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACACGGTTCGCATAGACCACCTTTCTTTCTTTCTTCTTCTTCCTTTTTTTTTTAA 603 41.29 MEREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGSHRPPFFLSSSSFFF 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71414 76518 - Lsi02G000060.1 Lsi02g00006 654748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00006 200 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00006 200 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 87 - -
Lsi02g00006 200 Pfam Protein kinase domain 87 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00006 200 PANTHER SERINE/THREONINE-PROTEIN KINASE 86 185 - -
Lsi02g00006 200 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 30 87 - -
Lsi02g00006 200 MobiDBLite consensus disorder prediction 148 167 - -
Lsi02g00006 200 SUPERFAMILY Protein kinase-like (PK-like) 47 185 IPR011009 -
Lsi02g00006 200 SMART serkin_6 56 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00006 200 Gene3D Transferase(Phosphotransferase) domain 1 91 186 - -
Lsi02g00006 200 Gene3D Phosphorylase Kinase; domain 1 5 90 - -
Lsi02g00006 200 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
Lsi02g00006 200 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 86 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00006 Lsi-Chr2:71414 Lsi09g00549 Lsi-Chr9:5801276 1.32E-32 dispersed
Lsi02g00006 Lsi-Chr2:71414 Lsi04g01409 Lsi-Chr4:21848408 5.42E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83326 PF00069 Pkinase 3.50E-19 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00006 - - csv:101214945 203.756