Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00006 | ATGGAAAGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACTCCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGCGTTTTCCTCGCAAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTCTTGCTTTGGAGTATTTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACACGGTTCGCATAGACCACCTTTCTTTCTTTCTTCTTCTTCCTTTTTTTTTTAA | 603 | 41.29 | MEREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGSHRPPFFLSSSSFFF | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 71414 | 76518 | - | Lsi02G000060.1 | Lsi02g00006 | 654748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00006 | 200 | ProSiteProfiles | Protein kinase domain profile. | 1 | 200 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00006 | 200 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 30 | 87 | - | - | |
Lsi02g00006 | 200 | Pfam | Protein kinase domain | 87 | 186 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00006 | 200 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 86 | 185 | - | - | |
Lsi02g00006 | 200 | PANTHER | SERINE/THREONINE PROTEIN KINASE IREH1-RELATED | 30 | 87 | - | - | |
Lsi02g00006 | 200 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
Lsi02g00006 | 200 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 185 | IPR011009 | - | |
Lsi02g00006 | 200 | SMART | serkin_6 | 56 | 199 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00006 | 200 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 186 | - | - | |
Lsi02g00006 | 200 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 90 | - | - | |
Lsi02g00006 | 200 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 97 | 109 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi02g00006 | 200 | PANTHER | SERINE/THREONINE PROTEIN KINASE IREH1-RELATED | 86 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00006 | Lsi-Chr2:71414 | Lsi09g00549 | Lsi-Chr9:5801276 | 1.32E-32 | dispersed | |
Lsi02g00006 | Lsi-Chr2:71414 | Lsi04g01409 | Lsi-Chr4:21848408 | 5.42E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83326 | PF00069 | Pkinase | 3.50E-19 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00006 | - | - | csv:101214945 | 203.756 |