Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00010 ATGTTTCTGCAGGTGATAGAGATATCAAGCAATGATCATGAGCCCTCTGACAAGGATATTTTGTATGCTGAAGGAGTCAGTCAAAGCAATGGCCTCGCTTTTATGGAGTTTTATTTTGATGATAGGAGCCCCATTTCTGAATTATATGGTGAAAATCTAGAACTGCCCCCTCCATTAACGAAATACCAACTAATTCAAATAAATTCCAACGGATTGGTTGATGGTTGCAAATGGTTAGATATGTTTGAAGACGTGAGGGCCATGATATTTTGTGTTTCCTTGAGTGACTATGACCAAATGTGGTCCCATAGTAAGGGTCCTCTACAGAATAAAATGCTGGCTAGTAGAAACTTGTTTCAGCATTTGGTGAGGCACCCTTGTTTTGAGAATACTCCTTTTCTGCTGCTCTTAAACAAGTATGATGCATTTGAGGAAAAGATAAATCAGGTTCCATTGTCGACTTGTGAGTGGTTCCAGGACTTCTGCCCAGTGAAACCACACAACAATAATCAGACATTGGCACAACAAGCATACTATTACATTGCAATGAAATTCAAGGAGCTATATTTCTCCATTAGTGGCCAAAAGTTGTTTGTTTGGCACACACGAGCTCGAGAGCGTGCCTCAGTGGATGATGCATTTAGGTATATTCGAGAGGTTCTCAAATGGGAAGAAGAGAAGGGCGATAATATGTATGATATCGTTGGAGATGAGTCATTTTACAGCACTGGAATAAGTTCCTCACCAGGCATGAATAACTTGCCAGTTACTTGA 774 40.31 MFLQVIEISSNDHEPSDKDILYAEGVSQSNGLAFMEFYFDDRSPISELYGENLELPPPLTKYQLIQINSNGLVDGCKWLDMFEDVRAMIFCVSLSDYDQMWSHSKGPLQNKMLASRNLFQHLVRHPCFENTPFLLLLNKYDAFEEKINQVPLSTCEWFQDFCPVKPHNNNQTLAQQAYYYIAMKFKELYFSISGQKLFVWHTRARERASVDDAFRYIREVLKWEEEKGDNMYDIVGDESFYSTGISSSPGMNNLPVT 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 135255 136534 + Lsi02G000100.1 Lsi02g00010 654752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00010 257 Pfam G-protein alpha subunit 2 220 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi02g00010 257 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 4 249 - -
Lsi02g00010 257 Gene3D - 62 231 IPR027417 -
Lsi02g00010 257 ProSiteProfiles G-alpha domain profile. 1 232 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi02g00010 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 226 IPR027417 -
Lsi02g00010 257 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 4 249 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi02g00010 257 SMART galpha_1 6 231 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00010 - - - csv:101210419 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00010 Lsi-Chr2:135255 Lsi07g01155 Lsi-Chr7:17011473 1.77E-112 dispersed
Lsi02g00010 Lsi-Chr2:135255 Lsi01g01019 Lsi-Chr1:8445038 1.88E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063848 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00010 Lsi_Chr02 FPKM 0.353909 0.0 4.248538 5.239089 13.870538 12.296279 12.906204 0.073465 0.0 0.065595