Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00014 ATGGGAGTTGCATTGTCAGTTTGCACACTGCCTGGCCAGGTCACATCAGATCGTTTGGGCCCAGGGAAAATGGAACTTGGTCTTGGAATTCATGGTGAACTTGGTGCTGCTGTGGCTGACCTTCAGCCAGTTGACGTGATAGTATCTCATGTTCTCAAACAAATATTATCACCGGAAACTAACTATGTTCCAATAACACGAGGTAATAGAGTGGTGCTCATGGTTAACGGGTTAGGTGCTACCCCAGTGATGGAATTAATGATTGCATCTGGGAAAGCAGTTCCTAAGTTGCAGTTGGAGCATGGGTTGGCTGTTGACAGAGTGTACAGTGGTTCATTTATGACTTCTCTTGATATGGCCGGTTTTTCAATTACCATCATGAAGTCAGATCAAACAGTTTTGCAACGGTTGGATGCTGCAACCAAGGCTCCTTGTTGGCCCATTGGTGCTGATGGCAGTCACCCACCTTCCAAAATACCTGTTCCAATACCACCACCTGCTCTTGCTACAAAGAATGGTGAGACATTAGGTGGACCCCTTCAACTAAGTCAACAAGGCATTATTCTAGAGGCTGCAATTAAGGCAGCTGCCAAAGCAGTGATCAGTCTCAAGGACACATTAAATGAATGGGATAGCAAAGTGGGCGATGGTGATTGTGGGTCAACGGTTGTTAAATGGTCAAATGTGTCTTGTCCTTCTTCGCAAGGGGAGCTCCTTAGGTTTATGAGATTTTCTAGACCTACCGTACCTAGTTCCTTGTCGTTTTCTTCATTTTCACACTTAGCATCACGAGTTATGCCGACAATTTTGCCTGGTGCCTTCATCTTCAACATCTCTATCTTCGATTTCACCGATCAATTGTTCCTCATCCAATGCAAACTTCTTACTCGCATGTCCTGCCGTCTATGTTTGACTCGTTGCCTCCAAATCTTGGCTGCAACTCTTTGGACATTTCTTGCACTGGGTTCAAAAGGCACTCTTCAGCTTGGATGGGCATGTGGTAGGTTTAGCCACAAGGAAGAAAATTGTAGAATGAGCCGTTCATTGGCAGATAGAAGAGAATGTGTGAGTGAGAGAATCCACCCAGCGTATACAAATTTGAAATCAGCCAGCCTAGATGACATCACCCCACAAAACTGGGCTGAAGCATTAGAAGCTTCCATAGCTGCAATTAGTAAGTATGGCGGGGCTACTGCTGGTTATCGAACATTACTCGATGCCCTCATTCCAGCGTCTGAAGTTCTTAGGAAGAAGTTAGATGCTGGTGAAAATCCGATCACCGCTTTTATTCACTCATCTGAAGCAGCATTGGCTGGGGCTGAAGCAACAAAAAACATGCAGGCTCTGGCTGGCCGTTCGTCATATGTATTTGGGGAAATCCTCGCAGCAGTTCCAGATCCGGGTGCAATGGCCGCAGCAGCATGGTATAGAGCTGCGGCTATGGCTGTCATGGACAGGTGCCAGTCTGCTTCATGA 1476 46.27 MGVALSVCTLPGQVTSDRLGPGKMELGLGIHGELGAAVADLQPVDVIVSHVLKQILSPETNYVPITRGNRVVLMVNGLGATPVMELMIASGKAVPKLQLEHGLAVDRVYSGSFMTSLDMAGFSITIMKSDQTVLQRLDAATKAPCWPIGADGSHPPSKIPVPIPPPALATKNGETLGGPLQLSQQGIILEAAIKAAAKAVISLKDTLNEWDSKVGDGDCGSTVVKWSNVSCPSSQGELLRFMRFSRPTVPSSLSFSSFSHLASRVMPTILPGAFIFNISIFDFTDQLFLIQCKLLTRMSCRLCLTRCLQILAATLWTFLALGSKGTLQLGWACGRFSHKEENCRMSRSLADRRECVSERIHPAYTNLKSASLDDITPQNWAEALEASIAAISKYGGATAGYRTLLDALIPASEVLRKKLDAGENPITAFIHSSEAALAGAEATKNMQALAGRSSYVFGEILAAVPDPGAMAAAAWYRAAAMAVMDRCQSAS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 170913 216301 + Lsi02G000140.1 Lsi02g00014 654756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00014 491 SMART Dak2_2 345 481 IPR004007 GO:0004371|GO:0006071
Lsi02g00014 491 Pfam DAK2 domain 372 479 IPR004007 GO:0004371|GO:0006071
Lsi02g00014 491 ProSiteProfiles DhaK domain profile. 1 146 IPR004006 GO:0004371|GO:0006071
Lsi02g00014 491 Gene3D Dihydroxyacetone kinase; domain 2 1 151 - -
Lsi02g00014 491 Gene3D - 184 235 IPR036117 GO:0004371|GO:0006071
Lsi02g00014 491 Pfam Dak1 domain 1 144 IPR004006 GO:0004371|GO:0006071
Lsi02g00014 491 SUPERFAMILY DhaL-like 184 225 IPR036117 GO:0004371|GO:0006071
Lsi02g00014 491 PANTHER DIHYDROXYACETONE KINASE 1 225 - -
Lsi02g00014 491 PANTHER DIHYDROXYACETONE KINASE 361 486 - -
Lsi02g00014 491 PANTHER TRIOKINASE/FMN CYCLASE 1 225 - -
Lsi02g00014 491 Gene3D - 359 484 IPR036117 GO:0004371|GO:0006071
Lsi02g00014 491 ProSiteProfiles DhaL domain profile. 187 481 IPR004007 GO:0004371|GO:0006071
Lsi02g00014 491 PANTHER TRIOKINASE/FMN CYCLASE 361 486 - -
Lsi02g00014 491 SUPERFAMILY DhaL-like 378 479 IPR036117 GO:0004371|GO:0006071
Lsi02g00014 491 SUPERFAMILY DAK1/DegV-like 1 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00014 - - - bhj:120082424 405.986
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g944 . . . . . . . Bma12g01273 Cmo13g01209 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0309 Lsi02g00014 Csa01g00489 Chy12g01592 Cme12g02050 . Blo15g00052 . . Bpe07g01078 . . . . . . . . Car13g00981 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00014 Lsi_Chr02 FPKM 19.326002 18.821712 17.019196 18.260614 16.160603 15.231212 15.658216 20.573147 17.664623 16.912256