Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00015 ATGATAGGCAATACGGCCACTTCGGCCTCCCCAGTTCTTCCTTCTTCGGAACCATACTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAAGAGGAAAAGAAGGCCTGCAGGAACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCTAAAACACTGCTAGAATCGGACCGGTACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACTTGCAGATGCACAGGCGCCGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTGTGCCCGGAACCCACCTGCCTGCACCATGACCCTTGCCACGCCCTCGGCGACCTTGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGTCACTCTTGCGATTGCGGCCGCGTTTTCTCCAGGGTGGAGAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATCCAGCCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGTGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTTCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGCCCCCACGGACGACTCCAACAACAACACTAATAACGATCATAATTTAGACCTCAAACTGTCAACTGCATCAAATGGTGTGGAAGGGCGGAGCAATAATAAAGGTTCTTCAACGAAACTCCAGCTCTCAATCGGGTCATTTGATTTCGGGGATAAGAAGAAAGGTGGGGTCCGAGGCGGGGCTGGGGACGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCGATGGCGGAGAAGGCATATGCGGAGGAAGCTAGGCAACAAGCAAAGCGGCAAATAGAAATTGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCACAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAACTAAAGCCGCAGCAGCAGCAGCAGCAACAACAACTACTACTACAACCACTGATCATGACAATTATTCCGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATGCTTAAACCGCCCAACAATTAA 1332 50.68 MIGNTATSASPVLPSSEPYSCLENGNNNNNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPACLSRTASSPSPSSDTNFSSAAPNNWPSLVAPPTLKPVDAIFLAPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKGGVRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEIAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKTKAAAAAAATTTTTTTTDHDNYSVAFSYVSSVITTEGEVEKDQSTIMLKPPNN 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 219800 222297 - Lsi02G000150.1 Lsi02g00015 654757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00015 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lsi02g00015 443 Gene3D Classic Zinc Finger 117 187 - -
Lsi02g00015 443 MobiDBLite consensus disorder prediction 1 48 - -
Lsi02g00015 443 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lsi02g00015 443 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Lsi02g00015 443 MobiDBLite consensus disorder prediction 202 225 - -
Lsi02g00015 443 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Lsi02g00015 443 Gene3D Classic Zinc Finger 39 101 - -
Lsi02g00015 443 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 430 - -
Lsi02g00015 443 SMART c2h2final6 102 132 IPR013087 -
Lsi02g00015 443 SMART c2h2final6 138 165 IPR013087 -
Lsi02g00015 443 SMART c2h2final6 61 83 IPR013087 -
Lsi02g00015 443 Coils Coil 308 370 - -
Lsi02g00015 443 MobiDBLite consensus disorder prediction 1 34 - -
Lsi02g00015 443 PANTHER OS03G0310200 PROTEIN 13 430 IPR039288 GO:0009630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00015 Lsi-Chr2:219800 Lsi02g00257 Lsi-Chr2:2194024 1.09E-171 dispersed
Lsi02g00015 Lsi-Chr2:219800 Lsi08g01410 Lsi-Chr8:22345397 6.02E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24719 PF00096 zf-C2H2 0.0042 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00015 K25871 - csv:101209426 694.886