Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00021 ATGCAAGTGTCCTGCCCTCATCCAAAGGATATTTACTTCTCAAAGTTGGATTTGCATGTGGGATTTCATTCTTGTGGTTTACTTTCTTATTTGCTACCAAGCACAAGGATACCTTCCTTCTCAAGCGTTTTGGAAAATGTCCCGAACTTGTTTCATAGAAATATTTCAAATACTTTTCTTCATAGTAATAACGTGCTTTTCCTGGGCCTCTATTTTGTTAAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAAAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCTAAAGAGGAGAATCTCAGGCTTGCAGATCTGGAGAAGAAAGCTGTTAATGATATGTTTGTCATACTCTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTTGAAATGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGTAATCTTGCCTTTAATTCTTTCTCAAGTCTCAGACTACAGTTTGGTAAGTTGGGAAAAATGATAGCAGCTCATCCACGATTAAAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCCGATGATGCAGGACCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACTGAAGAGCTCCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTGCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCGACAGAAGAAACGAGTGATCCTTTTGAGCATCTTGTTGCGACCATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGATCACTGTCTTCATCTATATCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGCAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTAA 1101 40.96 MQVSCPHPKDIYFSKLDLHVGFHSCGLLSYLLPSTRIPSFSSVLENVPNLFHRNISNTFLHSNNVLFLGLYFVKVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEENLRLADLEKKAVNDMFVILSDIWLDSEEAMGKLETILDGFENVEMVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLKEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 271476 274059 - Lsi02G000210.1 Lsi02g00021 654763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00021 366 Gene3D - 136 362 - -
Lsi02g00021 366 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 65 365 IPR016266 GO:0003677|GO:0006261|GO:0008622
Lsi02g00021 366 Pfam DNA polymerase alpha/epsilon subunit B 124 330 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00021 Lsi-Chr2:271476 Lsi03g00650 Lsi-Chr3:8202243 7.58E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00021 K02325 - csv:101207444 584.719