Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00023 ATGGTTTTGACGACAGTTGCAGACTCTGGAGAATCTGTGAACTGCACTTTTGGTTCCAGATATCTTCGCTCTCCTCCTCCCAAGTTCAAACTTGGGGAGCAATCTATTCCCAAGGATGCAGCGTATCAGATCATACACGATGAGTTGATGCTGGACGGGACTCCCAGGCTGAATTTGGCTTCTTTTGTTACCACTTGGATGGAGCCAGAGTGTGATAATCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCAGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGGAAATCTCAAGGCAAACCCTATGATAAACCCAACATAGTCACTGGTGCTAATGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGATCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAGCTCCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGATTGGGATTTTCGATTGCCTTTAGTGAAGAGCATCAATGTCAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAATGAGGACCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTCAACTTCTCAAAAGGTGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTTATACGGCTTGGCTTTGAGGAAAGTCCTTGTGTGAATTTGGTGGAAACAAAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCCAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGATTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAGCACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATCGTGCCAGCTTACACAATGCCACCAGATGCTCAGCACATTGCGGTGCTGCGCGTGGTAATTAGGGAGGACTTCAGCCGTAGTTTGGCAGAGAGACTGATCTCAGACATTGACAGAGTCTTGAAGGAAGTCGAGGCACTGCCAACTCGGGTGTCTCTGAAGGTAGCAGAAGTGAAAGCCGGCGTTGAAGATGGTGAAAGAGTTACAAAGCATGTGAAGAAGAGAGAACGGGAGATTGAGGAGGAAGTAACCACATATTGGAGACGGCTTGTGGATGACAAGAGAACTGGTCCCTTTAATTTTTCGCCCAATCTTCAGCCCCTCTGCGTTCTGCCGTCTGGTCGTGTCGTTAGCAACTTCTCTGCTCAAGCTCAAGCCTCAAGCGATTCGAGTGTTGGGTTTCCGATTTCGCCAATGCGTCGGATTTCTTCTCAAAGATTGTCGAGCTACTGA 1680 47.32 MVLTTVADSGESVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSNEDLPEELVFHINYLGSDQPTFTLNFSKGGSSQIIAQYYQFIRLGFEESPCVNLVETKGYKNVMENCRENARVLREGIEKMGRFEIVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPPDAQHIAVLRVVIREDFSRSLAERLISDIDRVLKEVEALPTRVSLKVAEVKAGVEDGERVTKHVKKREREIEEEVTTYWRRLVDDKRTGPFNFSPNLQPLCVLPSGRVVSNFSAQAQASSDSSVGFPISPMRRISSQRLSSY 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 277992 282032 - Lsi02G000230.1 Lsi02g00023 654765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00023 559 CDD DOPA_deC_like 58 448 - -
Lsi02g00023 559 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 390 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lsi02g00023 559 PANTHER GLUTAMATE DECARBOXYLASE 1 506 - -
Lsi02g00023 559 Gene3D - 1 64 - -
Lsi02g00023 559 Gene3D - 65 369 IPR015421 GO:0003824
Lsi02g00023 559 PANTHER GLUTAMATE DECARBOXYLASE 1 506 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi02g00023 559 Gene3D - 370 457 - -
Lsi02g00023 559 SUPERFAMILY PLP-dependent transferases 15 454 IPR015424 -
Lsi02g00023 559 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 453 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00023 Lsi-Chr2:277992 Lsi09g00733 Lsi-Chr9:8445567 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00023 K01580 - csv:101210903 922.154