Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00024 ATGGACGACTTTGGTGGTGGCTCCGGTTGGGAAAACGATTCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAGTGTCCACACCCGGATGAGAAGCAGAGATTACAGTTAAGCAGAGAGTTGGGATTGGCTCCTCGCCAAATCAAGTTTTGGTTCCAGAACCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGGTGCGAGAACATAGCCATCAGAGAAGCACTCAAAAATGTCATTTGTCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTTGACGAGCACAAACTTCGAATCGAAAACTCCCATTTGAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCAGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCCTCTCATTTTTCCTCCTTAGAGCTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGCCCTTCTCTTGATCTCGATTTACTTCCTGCAAGTTCTACAAACGTTCCCAGTTTGCCATACCACCACCCAATTCACTTCTCCTCTGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGCTGCTCAGGCTTTCCCAAACTAATGAGCCATTCTGGATGAAATCACCGCTTGATGGCCGCGACCTTCTCGACCTCGAAACCTATGAACAAGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTCCATTTTCGCACTGAAGCATCTAGAGATACAGGCGTCGTGATCATGAGTAGTGCAGCACTGATTGACATTTTTATGGACTCGGTATGGCTACAATACTCTCCCTCCCTCTTAGCACATTGCTGTTTCTTAATAGTTACAACAATGGAATTGAAAACAAATGGACAGAATTATTTCCCACAGTTGTCTCAATTGCAAGAACAATTGAAGTTATATCGTCTGGAATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGGTATATAGCTAGTTTCCTAATTTTTGAGTCCAAAGTGTTTGAATTGCAGATGTACCAAGAATTGCAGCAACTCTCCCCATTGGTTCCAACTCGTCACTTTTACGTCCTCCGATATTGTCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTATAATATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATCCAGGACATGCCTAATGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAGAGGCTTGACTCATTGGCTTTTTAGAGATATTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTGGTAGTTCAAATCAGGATCTTGGTGGAGGTAACGTCCGATCCAAGGTTGATTTTACTGTTTTACAATCAAGTACTCAAGATTGTTATATTCTCTTAGTAATTCCATCACCAGAAGGAAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTCTGTGCTAGTATCAGCACATCTCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGGTATTTGTGAATTCAAAATTTCAGATTGGTCAAATACTTTATGATGACAATGACTTCATTAACTGTGTAAGTTTAATGCTGCATCAGTGGGATGTTCTCTCGGATGGAAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCCCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAAAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGACCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTACCTTCAGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGCGCATCAAGCAGCTCAGACGTTCACAACAGGTCGGGGGGCTCGCTGGTGACGGTTGCATTTCAGATATTAGTGAGCAGCTTGCCGTCTGGGAAGCTGAACTTGGAGTCAGTGACAACGGTTAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATATTGGGGGCTTTGAATGTGCTGAACCATTATTTACTGCTGCTGCTGCTGCTGTTGCCAAAGCAAAGTTCCTGCCATCCCATTCCCATTTTACAGCCAATATTGTTGTTGTTGTTGTTGTTTTTTGGGGGTTTGGGGAGAAACTGTTCATGTTCAATATCTCAGCTCCAGAGTCCACTGAGAGTCAAGAACGCACCATACAGAATGTAATGGGGTTAGGCCTGAATGAGGCCCACATGTTGGCTTGGGGTGAAGCCCAAACAATCTCAAAGTCACAGGAAGAGAAAGCCCATTTATATGCCTTGTCTACCGTCTGTTGGCTGTTGCGTGGCACTGGCGGGGAAATTGGCAGCTGCACAGTGGGACTGGGAGCTTCGTCTTTGATAAGGCAGAAGAGGCACAGAGATAGGCTTAGAGAACAGGGCCCTCGCAATCGGATTAGCCATGGCGTTCTCTACAACTTAATTCTTCGGCGACGCATAAGAGAGCAAGACGGATTTGCATTTGTGCCAAGAAAAGCAGTTCGTTGCAGTACAGAAAACTCGGGGACTCTGACCTTCAAATTTCTGAAGTCACGCTTGGAACGTAAGGTTTCATGCTGGAGCACTAAGCGGCGGCGGCAAATGACTTTTGGGCAACAAAACACCGAGAAAGAAGCTTATGAACAATTGAGTTATGCTTATGAGCATGGAATCAATATTATAGATACTGCAGAGGCATATCCAGTTCCAATGAAGCAAGAGACACAGGGAAGAACAGACATCTACATTGGTAACTGGCTTAAATCAAAGCCCAGAGACAAGATTATTTTGGCAACAAAAGTCTGTGGTTACTCAGAGCGATCACCTTATTTGCGTGAAAATGCAAAAGTTTTACGGGTTGATCGTTATAATATTAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTGAACACTGACTACATTGACTTACTGCAAATTCATTGGCCAGACCGCTATGCTCCCCTATTTGGTGATTTTGTTTACGATTTTTCGAAATGGAGGCCAAGTGTGCCTTTTACAGAGCAACTGAAGGCATTTCAGGAACTTATTGAAGAAGGAAAGATACGCTACATTGGTGTTTCAAATGAAACTTCATATGGAGTGATGGAATTTGTTCAGACAGCAAAATTTGAAGGATTGCCAAAGATCGTTAGTATCCAAAATAACTACAGTCTTATTAACAGATGCCGCTTTGAAGTCGATCTTGTTGAGGTTTGTCATCCAAACAACTACAATGTTGGCTTGCTTGGTTATTCTCCTTTGGGTGGTGGAACGCTGAGTGGCAAGTACTTGGATGTCAATTATCAAGATGCAGGAAAAGGAAGGCTGAGCCTCTTCCCTGGCTTCATGGATAGATACAATAAATCTATTGCCAAGGAAGCAATAACTGAATACGTGCAGTTGGCCAAAAAGTACGGCCTAACTCCAGTACAGCTTGCACTTGGGTTTGCTCGAGACCGTCCATTTATGACGAGTTCGATAATTGGCGCAACATCCATGGACCAGCTTAGAGAAGACCTCGATGCTTTCACGATGACCGAGCGGCCGTTGCCGGCAGAAGTGATGGCAGACATTGAAGCCATTTTCCGAAGATATAAAGATCCAGCTATTTAG 4020 44.75 MDDFGGGSGWENDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENSHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLPASSTNVPSLPYHHPIHFSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPLDGRDLLDLETYEQAFPRPNTPLKNLHFRTEASRDTGVVIMSSAALIDIFMDSVWLQYSPSLLAHCCFLIVTTMELKTNGQNYFPQLSQLQEQLKLYRLECWEVRMAPCNWYIASFLIFESKVFELQMYQELQQLSPLVPTRHFYVLRYCQQIEQGVWAVVDVSYNIPRENQIVSHSQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGLTHWLFRDIIHSGLAFGAERWLATLQRMSERFACLMVTGSSNQDLGGGNVRSKVDFTVLQSSTQDCYILLVIPSPEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQVFVNSKFQIGQILYDDNDFINCVSLMLHQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHNRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHIGGFECAEPLFTAAAAAVAKAKFLPSHSHFTANIVVVVVVFWGFGEKLFMFNISAPESTESQERTIQNVMGLGLNEAHMLAWGEAQTISKSQEEKAHLYALSTVCWLLRGTGGEIGSCTVGLGASSLIRQKRHRDRLREQGPRNRISHGVLYNLILRRRIREQDGFAFVPRKAVRCSTENSGTLTFKFLKSRLERKVSCWSTKRRRQMTFGQQNTEKEAYEQLSYAYEHGINIIDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYSERSPYLRENAKVLRVDRYNIRESVEKSLKRLNTDYIDLLQIHWPDRYAPLFGDFVYDFSKWRPSVPFTEQLKAFQELIEEGKIRYIGVSNETSYGVMEFVQTAKFEGLPKIVSIQNNYSLINRCRFEVDLVEVCHPNNYNVGLLGYSPLGGGTLSGKYLDVNYQDAGKGRLSLFPGFMDRYNKSIAKEAITEYVQLAKKYGLTPVQLALGFARDRPFMTSSIIGATSMDQLREDLDAFTMTERPLPAEVMADIEAIFRRYKDPAI 1339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 283164 299221 - Lsi02G000240.1 Lsi02g00024 654766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00024 1339 PRINTS Aldo-keto reductase signature 1148 1165 IPR020471 GO:0016491
Lsi02g00024 1339 PRINTS Aldo-keto reductase signature 1100 1118 IPR020471 GO:0016491
Lsi02g00024 1339 Gene3D - 10 95 - -
Lsi02g00024 1339 SUPERFAMILY Homeodomain-like 9 79 IPR009057 -
Lsi02g00024 1339 SMART START_1 219 484 IPR002913 GO:0008289
Lsi02g00024 1339 ProSiteProfiles START domain profile. 210 487 IPR002913 GO:0008289
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 641 796 - -
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 312 - -
Lsi02g00024 1339 CDD START_ArGLABRA2_like 214 483 - -
Lsi02g00024 1339 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Lsi02g00024 1339 MobiDBLite consensus disorder prediction 1 27 - -
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 363 619 - -
Lsi02g00024 1339 Pfam START domain 370 483 IPR002913 GO:0008289
Lsi02g00024 1339 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Lsi02g00024 1339 CDD homeodomain 22 80 IPR001356 GO:0003677
Lsi02g00024 1339 SUPERFAMILY NAD(P)-linked oxidoreductase 1004 1335 IPR036812 -
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 641 796 IPR042160 -
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 363 619 IPR042160 -
Lsi02g00024 1339 SMART HOX_1 20 83 IPR001356 GO:0003677
Lsi02g00024 1339 SUPERFAMILY Bet v1-like 213 485 - -
Lsi02g00024 1339 Gene3D - 1003 1339 IPR036812 -
Lsi02g00024 1339 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Lsi02g00024 1339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 312 IPR042160 -
Lsi02g00024 1339 SUPERFAMILY Bet v1-like 528 790 - -
Lsi02g00024 1339 CDD AKR_Tas-like 1004 1330 - -
Lsi02g00024 1339 Gene3D - 366 483 IPR023393 -
Lsi02g00024 1339 Pfam Aldo/keto reductase family 1004 1330 IPR023210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00024 Lsi-Chr2:283164 Lsi05g00276 Lsi-Chr5:3590233 0 dispersed
Lsi05g00416 Lsi-Chr5:5257545 Lsi02g00024 Lsi-Chr2:283164 1.00E-64 dispersed
Lsi11g00039 Lsi-Chr11:455948 Lsi02g00024 Lsi-Chr2:283164 6.94E-19 dispersed
Lsi02g00024 Lsi-Chr2:283164 Lsi09g01939 Lsi-Chr9:28175003 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24721 PF00248 Aldo_ket_red 2.20E-66 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00024 K09338 - csv:101215660 1267.68