Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00024 | ATGGACGACTTTGGTGGTGGCTCCGGTTGGGAAAACGATTCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAGTGTCCACACCCGGATGAGAAGCAGAGATTACAGTTAAGCAGAGAGTTGGGATTGGCTCCTCGCCAAATCAAGTTTTGGTTCCAGAACCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGGTGCGAGAACATAGCCATCAGAGAAGCACTCAAAAATGTCATTTGTCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTTGACGAGCACAAACTTCGAATCGAAAACTCCCATTTGAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCAGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCCTCTCATTTTTCCTCCTTAGAGCTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGCCCTTCTCTTGATCTCGATTTACTTCCTGCAAGTTCTACAAACGTTCCCAGTTTGCCATACCACCACCCAATTCACTTCTCCTCTGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGCTGCTCAGGCTTTCCCAAACTAATGAGCCATTCTGGATGAAATCACCGCTTGATGGCCGCGACCTTCTCGACCTCGAAACCTATGAACAAGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTCCATTTTCGCACTGAAGCATCTAGAGATACAGGCGTCGTGATCATGAGTAGTGCAGCACTGATTGACATTTTTATGGACTCGGTATGGCTACAATACTCTCCCTCCCTCTTAGCACATTGCTGTTTCTTAATAGTTACAACAATGGAATTGAAAACAAATGGACAGAATTATTTCCCACAGTTGTCTCAATTGCAAGAACAATTGAAGTTATATCGTCTGGAATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGGTATATAGCTAGTTTCCTAATTTTTGAGTCCAAAGTGTTTGAATTGCAGATGTACCAAGAATTGCAGCAACTCTCCCCATTGGTTCCAACTCGTCACTTTTACGTCCTCCGATATTGTCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTATAATATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATCCAGGACATGCCTAATGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAGAGGCTTGACTCATTGGCTTTTTAGAGATATTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTGGTAGTTCAAATCAGGATCTTGGTGGAGGTAACGTCCGATCCAAGGTTGATTTTACTGTTTTACAATCAAGTACTCAAGATTGTTATATTCTCTTAGTAATTCCATCACCAGAAGGAAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTCTGTGCTAGTATCAGCACATCTCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGGTATTTGTGAATTCAAAATTTCAGATTGGTCAAATACTTTATGATGACAATGACTTCATTAACTGTGTAAGTTTAATGCTGCATCAGTGGGATGTTCTCTCGGATGGAAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCCCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAAAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGACCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTACCTTCAGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGCGCATCAAGCAGCTCAGACGTTCACAACAGGTCGGGGGGCTCGCTGGTGACGGTTGCATTTCAGATATTAGTGAGCAGCTTGCCGTCTGGGAAGCTGAACTTGGAGTCAGTGACAACGGTTAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATATTGGGGGCTTTGAATGTGCTGAACCATTATTTACTGCTGCTGCTGCTGCTGTTGCCAAAGCAAAGTTCCTGCCATCCCATTCCCATTTTACAGCCAATATTGTTGTTGTTGTTGTTGTTTTTTGGGGGTTTGGGGAGAAACTGTTCATGTTCAATATCTCAGCTCCAGAGTCCACTGAGAGTCAAGAACGCACCATACAGAATGTAATGGGGTTAGGCCTGAATGAGGCCCACATGTTGGCTTGGGGTGAAGCCCAAACAATCTCAAAGTCACAGGAAGAGAAAGCCCATTTATATGCCTTGTCTACCGTCTGTTGGCTGTTGCGTGGCACTGGCGGGGAAATTGGCAGCTGCACAGTGGGACTGGGAGCTTCGTCTTTGATAAGGCAGAAGAGGCACAGAGATAGGCTTAGAGAACAGGGCCCTCGCAATCGGATTAGCCATGGCGTTCTCTACAACTTAATTCTTCGGCGACGCATAAGAGAGCAAGACGGATTTGCATTTGTGCCAAGAAAAGCAGTTCGTTGCAGTACAGAAAACTCGGGGACTCTGACCTTCAAATTTCTGAAGTCACGCTTGGAACGTAAGGTTTCATGCTGGAGCACTAAGCGGCGGCGGCAAATGACTTTTGGGCAACAAAACACCGAGAAAGAAGCTTATGAACAATTGAGTTATGCTTATGAGCATGGAATCAATATTATAGATACTGCAGAGGCATATCCAGTTCCAATGAAGCAAGAGACACAGGGAAGAACAGACATCTACATTGGTAACTGGCTTAAATCAAAGCCCAGAGACAAGATTATTTTGGCAACAAAAGTCTGTGGTTACTCAGAGCGATCACCTTATTTGCGTGAAAATGCAAAAGTTTTACGGGTTGATCGTTATAATATTAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTGAACACTGACTACATTGACTTACTGCAAATTCATTGGCCAGACCGCTATGCTCCCCTATTTGGTGATTTTGTTTACGATTTTTCGAAATGGAGGCCAAGTGTGCCTTTTACAGAGCAACTGAAGGCATTTCAGGAACTTATTGAAGAAGGAAAGATACGCTACATTGGTGTTTCAAATGAAACTTCATATGGAGTGATGGAATTTGTTCAGACAGCAAAATTTGAAGGATTGCCAAAGATCGTTAGTATCCAAAATAACTACAGTCTTATTAACAGATGCCGCTTTGAAGTCGATCTTGTTGAGGTTTGTCATCCAAACAACTACAATGTTGGCTTGCTTGGTTATTCTCCTTTGGGTGGTGGAACGCTGAGTGGCAAGTACTTGGATGTCAATTATCAAGATGCAGGAAAAGGAAGGCTGAGCCTCTTCCCTGGCTTCATGGATAGATACAATAAATCTATTGCCAAGGAAGCAATAACTGAATACGTGCAGTTGGCCAAAAAGTACGGCCTAACTCCAGTACAGCTTGCACTTGGGTTTGCTCGAGACCGTCCATTTATGACGAGTTCGATAATTGGCGCAACATCCATGGACCAGCTTAGAGAAGACCTCGATGCTTTCACGATGACCGAGCGGCCGTTGCCGGCAGAAGTGATGGCAGACATTGAAGCCATTTTCCGAAGATATAAAGATCCAGCTATTTAG | 4020 | 44.75 | MDDFGGGSGWENDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENSHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLPASSTNVPSLPYHHPIHFSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPLDGRDLLDLETYEQAFPRPNTPLKNLHFRTEASRDTGVVIMSSAALIDIFMDSVWLQYSPSLLAHCCFLIVTTMELKTNGQNYFPQLSQLQEQLKLYRLECWEVRMAPCNWYIASFLIFESKVFELQMYQELQQLSPLVPTRHFYVLRYCQQIEQGVWAVVDVSYNIPRENQIVSHSQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGLTHWLFRDIIHSGLAFGAERWLATLQRMSERFACLMVTGSSNQDLGGGNVRSKVDFTVLQSSTQDCYILLVIPSPEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQVFVNSKFQIGQILYDDNDFINCVSLMLHQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHNRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHIGGFECAEPLFTAAAAAVAKAKFLPSHSHFTANIVVVVVVFWGFGEKLFMFNISAPESTESQERTIQNVMGLGLNEAHMLAWGEAQTISKSQEEKAHLYALSTVCWLLRGTGGEIGSCTVGLGASSLIRQKRHRDRLREQGPRNRISHGVLYNLILRRRIREQDGFAFVPRKAVRCSTENSGTLTFKFLKSRLERKVSCWSTKRRRQMTFGQQNTEKEAYEQLSYAYEHGINIIDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYSERSPYLRENAKVLRVDRYNIRESVEKSLKRLNTDYIDLLQIHWPDRYAPLFGDFVYDFSKWRPSVPFTEQLKAFQELIEEGKIRYIGVSNETSYGVMEFVQTAKFEGLPKIVSIQNNYSLINRCRFEVDLVEVCHPNNYNVGLLGYSPLGGGTLSGKYLDVNYQDAGKGRLSLFPGFMDRYNKSIAKEAITEYVQLAKKYGLTPVQLALGFARDRPFMTSSIIGATSMDQLREDLDAFTMTERPLPAEVMADIEAIFRRYKDPAI | 1339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 283164 | 299221 | - | Lsi02G000240.1 | Lsi02g00024 | 654766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00024 | 1339 | PRINTS | Aldo-keto reductase signature | 1148 | 1165 | IPR020471 | GO:0016491 | |
Lsi02g00024 | 1339 | PRINTS | Aldo-keto reductase signature | 1100 | 1118 | IPR020471 | GO:0016491 | |
Lsi02g00024 | 1339 | Gene3D | - | 10 | 95 | - | - | |
Lsi02g00024 | 1339 | SUPERFAMILY | Homeodomain-like | 9 | 79 | IPR009057 | - | |
Lsi02g00024 | 1339 | SMART | START_1 | 219 | 484 | IPR002913 | GO:0008289 | |
Lsi02g00024 | 1339 | ProSiteProfiles | START domain profile. | 210 | 487 | IPR002913 | GO:0008289 | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 | 641 | 796 | - | - | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 | 6 | 312 | - | - | |
Lsi02g00024 | 1339 | CDD | START_ArGLABRA2_like | 214 | 483 | - | - | |
Lsi02g00024 | 1339 | ProSiteProfiles | 'Homeobox' domain profile. | 19 | 79 | IPR001356 | GO:0003677 | |
Lsi02g00024 | 1339 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 | 363 | 619 | - | - | |
Lsi02g00024 | 1339 | Pfam | START domain | 370 | 483 | IPR002913 | GO:0008289 | |
Lsi02g00024 | 1339 | ProSitePatterns | 'Homeobox' domain signature. | 54 | 77 | IPR017970 | GO:0000981|GO:0006355 | |
Lsi02g00024 | 1339 | CDD | homeodomain | 22 | 80 | IPR001356 | GO:0003677 | |
Lsi02g00024 | 1339 | SUPERFAMILY | NAD(P)-linked oxidoreductase | 1004 | 1335 | IPR036812 | - | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 641 | 796 | IPR042160 | - | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 363 | 619 | IPR042160 | - | |
Lsi02g00024 | 1339 | SMART | HOX_1 | 20 | 83 | IPR001356 | GO:0003677 | |
Lsi02g00024 | 1339 | SUPERFAMILY | Bet v1-like | 213 | 485 | - | - | |
Lsi02g00024 | 1339 | Gene3D | - | 1003 | 1339 | IPR036812 | - | |
Lsi02g00024 | 1339 | Pfam | Homeodomain | 22 | 77 | IPR001356 | GO:0003677 | |
Lsi02g00024 | 1339 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 6 | 312 | IPR042160 | - | |
Lsi02g00024 | 1339 | SUPERFAMILY | Bet v1-like | 528 | 790 | - | - | |
Lsi02g00024 | 1339 | CDD | AKR_Tas-like | 1004 | 1330 | - | - | |
Lsi02g00024 | 1339 | Gene3D | - | 366 | 483 | IPR023393 | - | |
Lsi02g00024 | 1339 | Pfam | Aldo/keto reductase family | 1004 | 1330 | IPR023210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00024 | Lsi-Chr2:283164 | Lsi05g00276 | Lsi-Chr5:3590233 | 0 | dispersed | |
Lsi05g00416 | Lsi-Chr5:5257545 | Lsi02g00024 | Lsi-Chr2:283164 | 1.00E-64 | dispersed | |
Lsi11g00039 | Lsi-Chr11:455948 | Lsi02g00024 | Lsi-Chr2:283164 | 6.94E-19 | dispersed | |
Lsi02g00024 | Lsi-Chr2:283164 | Lsi09g01939 | Lsi-Chr9:28175003 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24721 | PF00248 | Aldo_ket_red | 2.20E-66 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00024 | K09338 | - | csv:101215660 | 1267.68 |