Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00025 ATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTTGATGAACAAGTGGATTCTTATTTTCCTTCTTATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGGATGTATGGTAGTGAAGCAAATCTTGTTGGTCATACTGGTCCCCTTAGAATCGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACTGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAAAATTCCCTTCCTTCAAGATGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTGATAAGGTCTGGCCAGCTGGGACTGTGCAATGATCCTTTCTGTATAACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGTTCAAGAATTTCAGGCATATTTGATGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAACTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCATTATTTTTCTTCTTGCTGTCTGTCCAAGATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACAGCATTGGTGGTTTTTCGGAGCATGACTGACTTTATCTATTGCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCAAAGAAAATTGCTATGAATTACCTTAAAGGAAAATTTTTTATAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGTCTTTGGGGTCATCCGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGCTCAATATATTCCCAGACTGTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCATTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGACGCCTGCAATAACACTGGAAATACGAGCTGCTTGGAATATATAGATTGTGGGCATGGGGATGAAGCTGGGAGGATTCAGGATCCACAGCGGGATTCATGGAAAACTAATGAGAATGCTACGGCATGTTTTGCCAAAGAAGGTTTTAATTATGGAATCTACCTTCAGGCTGTAAACCTTACTACAGAAAATAGTATATTAACGAGATATACTTACTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGATCTACAAAGAAACATAAGACGGCATCTCTTTAGATTTGTCAACAAGGTTCGCATTTTTGCACTGATGGACTATGAGCCTATTTTAGATGCAATACGTGAGAGACTGCGGCAAAAGACATACATAGAAGGAAGTGAAGTTTTCTCTGCTGGAGATATAGTTGAGAAGATGGTTTTCATCGTACGGGGGAAAATGGAGAGCCGTGTAGATGGAAGTGGGATTGTGGTTCCCTTATCTGAAGGAGACGTCTGCGGTGAGGAACTTCTCACATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAACCGTACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTATTGGAGGTATCTAGCGGCAATGCGTATTCAAGTAGCTTGGAGATACAGGAAAAGGCGTCTATCTCGAGTTCAAACCTCTCAATCTAACTAA 2217 41.95 MAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPATSSGMYGSEANLVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAEKFPSFKMTDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGNFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQDKNKCIVIDWSLTTALVVFRSMTDFIYCLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLKGKFFIDLLVVLPLPQSLGSSGANYAKNLLRTAVTAQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFRDACNNTGNTSCLEYIDCGHGDEAGRIQDPQRDSWKTNENATACFAKEGFNYGIYLQAVNLTTENSILTRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIVEKMVFIVRGKMESRVDGSGIVVPLSEGDVCGEELLTWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAAMRIQVAWRYRKRRLSRVQTSQSN 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 304537 333499 - Lsi02G000250.1 Lsi02g00025 654767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00025 738 Gene3D Helix hairpin bin 519 560 - -
Lsi02g00025 738 Pfam Ion transport protein 208 521 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi02g00025 738 Gene3D - 199 518 - -
Lsi02g00025 738 Gene3D Jelly Rolls 566 692 IPR014710 -
Lsi02g00025 738 SUPERFAMILY Voltage-gated potassium channels 203 521 - -
Lsi02g00025 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 734 - -
Lsi02g00025 738 CDD CAP_ED 568 686 IPR000595 -
Lsi02g00025 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 734 - -
Lsi02g00025 738 SUPERFAMILY cAMP-binding domain-like 521 694 IPR018490 -
Lsi02g00025 738 ProSiteProfiles cAMP/cGMP binding motif profile. 581 638 IPR000595 -
Lsi02g00025 738 MobiDBLite consensus disorder prediction 74 93 - -
Lsi02g00025 738 SMART cnmp_10 568 705 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00025 Lsi-Chr2:304537 Lsi10g01258 Lsi-Chr10:16827240 1.81E-112 dispersed
Lsi02g00025 Lsi-Chr2:304537 Lsi03g01408 Lsi-Chr3:25030619 5.85E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00025 K05391 - csv:101215903 1355.89