Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00032 ATGAATGGCGGGAAGGAGGTGTATGTAATGCATGAAATTGAATCTACTCTGAGTCTCTCCGGTTCTCTTCTCTTTCACTCTGTCCTCCTCCTCTTCTCGCCGCACCTTCTTCTTGCAGCTGCTTTCTTCCAATTTGAAGAACCACCGTCCGGTACTTGGAGTGCCACTGGACGAACACAAGAAGCAATTCCTGAGATTTGGACCAAAATGGAGGCACCGAGACCGGGCTGGGCAGTGAGGATGATAATCGTGATGGTAATTACGGCAATTTTCTTTCGCTGCGTCACTGCCACCAACCATTCCGTTGGTGGATCTTCTGGCGGGAAGGAGGTGTATGTAATGCATGAAATTGAATCTACTCTGAGTCTCTCCGGTTCTCTTCTCTTTCACTCTGTCCTCCTCCTCTTCTCGCCGCACCTTCTTCTTGCAGCTGCTTTCTTCCAATTTGAAGAACCACCGTCCGGTACTTGGAGTGCCACTGGACGAACACAAGAAGCAATTCCTGAGATTTGGACCAAAATGGAGGCACCGAGACCGGGCTGGGCAGTGAGGATGATAATCGTGATGGTAATTACGGCAATTTTCTTTCGCTGCGTCACTGCCACCAACCATTCCGTTGGTGGATCTTCTGGTTGGGATCTCAATTCCAACATCCTTGCTTGGTCTGCGGCCACCACGTTCCAAGTCGGTGACTATCTCGTGTTCAAGTACTTGCCAGTTCACGACGTGCTGGAAGTGAACCGAACAGATTTCTTCAATTGCCGCACCGTGAACCCAATGAGCACCCACAGTGATGGAGAGACAGTGTTCCACCTGAACCAACTAGGCAGTCGCTACTTCATATGCGGCCGCCCTCAACACTGCCTCAGGGGTCTTAAGCTCCGAGTCCAAGTCCTCCAACGCTTGACCGACGCCAACAATTCAACGCACGGCGGCGCTAACCAAGAGGAGCGACTTAGGCCACGCCGCCCTCCTCGGTCTCCTCCCTCACCTTCTTCTCCATCTATTGAACGCCCACCAATGCCTGACCTTCCGGTGGCGCCATCGCCTTGCAGTTGTTCCGGAGTGGGCGAGATGATGATGAAAAATGTCCCAATTAACTGGTGTTTCGTGTTGCTCTTGATTATGCTTACTTTCATTCCTTGA 1146 51.48 MNGGKEVYVMHEIESTLSLSGSLLFHSVLLLFSPHLLLAAAFFQFEEPPSGTWSATGRTQEAIPEIWTKMEAPRPGWAVRMIIVMVITAIFFRCVTATNHSVGGSSGGKEVYVMHEIESTLSLSGSLLFHSVLLLFSPHLLLAAAFFQFEEPPSGTWSATGRTQEAIPEIWTKMEAPRPGWAVRMIIVMVITAIFFRCVTATNHSVGGSSGWDLNSNILAWSAATTFQVGDYLVFKYLPVHDVLEVNRTDFFNCRTVNPMSTHSDGETVFHLNQLGSRYFICGRPQHCLRGLKLRVQVLQRLTDANNSTHGGANQEERLRPRRPPRSPPSPSSPSIERPPMPDLPVAPSPCSCSGVGEMMMKNVPINWCFVLLLIMLTFIP 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 359526 363317 - Lsi02G000320.1 Lsi02g00032 654774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00032 381 PANTHER BLUE COPPER PROTEIN 203 306 IPR039391 GO:0009055
Lsi02g00032 381 Gene3D - 200 303 IPR008972 -
Lsi02g00032 381 ProSiteProfiles Phytocyanin domain profile. 202 300 IPR003245 GO:0009055
Lsi02g00032 381 SUPERFAMILY Cupredoxins 201 299 IPR008972 -
Lsi02g00032 381 CDD Phytocyanin 202 298 - -
Lsi02g00032 381 MobiDBLite consensus disorder prediction 325 344 - -
Lsi02g00032 381 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 203 306 - -
Lsi02g00032 381 Pfam Plastocyanin-like domain 214 291 IPR003245 GO:0009055
Lsi02g00032 381 MobiDBLite consensus disorder prediction 305 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00032 - - - bhj:120084209 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00032 Lsi-Chr2:359526 Lsi10g00159 Lsi-Chr10:2565306 7.44E-29 dispersed
Lsi02g00032 Lsi-Chr2:359526 Lsi04g02258 Lsi-Chr4:29623238 3.33E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g973 . . . . Bpe12g00630 . . Bma12g01259 . . . . . . . Cpe20g00050 . . . . . . . . . . . . . . . . . . . Lsi02g00032 Csa01g00508 Chy12g01576 Cme12g02034 . . . . Bpe07g01066 . . . . . . Cma13g01102 . Car13g00936 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011830 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00032 Lsi_Chr02 FPKM 7.760962 9.551937 39.0256 35.752254 12.392661 12.875199 12.369966 32.226009 35.162598 30.815115