Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00035 ATGGCGGCTCCGGAGGAAGAAGAGGTTTCGACCAATCTAACATCTTCATCTCCATCTTGTGATACTTTCAGCAGCAACAGAAACAGTATAATACTCGGCACCAAGCCTTCTTCAATGTTATCTTGCTCTCTCGCAGATATGGAGCAGAGGATCAATTTACTTGCTATGAAAAATGCTGTAGAGGATGTTGGGGACTCTTTTGCTGAACGTGCAGAATTTTACTACAATAAACGCCCTCAACTGTTGGCACTTCTCCAAGAACTATACACTGCTTACACCACCTTATCCGATCGGTATATCCAAACTGTTGCCAAACATCACAACAGACAGTCTTCTGTTACTTCAACCCTCGAGTCTTTTGACGGGGCCGGAGATTCAGGGATCAGTCAGATTGAGTCTGATGCAGAGAGTTCTCTGTCCTACCAGCAAGTATCTGTAACATCAGCTAAAAACTGTGGTATGGTAGACAATGATGCTTTTATTGCTGAGCTTGTCATCAAGAATGTGGAGTACGACATTATTACAAATGAGGTAAACACCCTGGAAAGGCAATGCTGCGATTCATCAAGGAAGATAGAGCTTCAGAAGAGTTTGCTTGAGGTCTTGGAGTCTGAGAGGCTCATACTGCTAAATGAAAATGCAAGATTAGAGTATAGGGTGGCTTCCTTGATGGAGGAAAACAAGGGGCTGGTAGCAGAGTCTGTTTTCATGAAACGGAAGGCAGGCGAGATGGCACGCTGTATGCTGAAACTACGGGATGATCATAGGGTTTACCTGCTTAACCAGAAAATTGAAGATCTTCAGGGCCAGATCAATGGGCTGGAGAAAAGGAATCAAGAGTACTATGATCAACTTGTGAAGACAGATAAAGCAATGGTAGAGAGTAGATGCAGCAACAAGCATAAAGACCAGAATGGGAATGAGGTAACATTGGAGGCATGCTTTCAAATTGGAAAACTAAAATCCAAGAGGAATTCTGGTGTCAACAGCAGTGCCATTGACAAAACAAGTAACAGCAGAAGGAAGACTTACAGGTGGTGGGCAAAGGTGAAGAGCATGGACATGTTTTTGTGTGGTCACAGCACAAATCCTACTTAA 1098 43.44 MAAPEEEEVSTNLTSSSPSCDTFSSNRNSIILGTKPSSMLSCSLADMEQRINLLAMKNAVEDVGDSFAERAEFYYNKRPQLLALLQELYTAYTTLSDRYIQTVAKHHNRQSSVTSTLESFDGAGDSGISQIESDAESSLSYQQVSVTSAKNCGMVDNDAFIAELVIKNVEYDIITNEVNTLERQCCDSSRKIELQKSLLEVLESERLILLNENARLEYRVASLMEENKGLVAESVFMKRKAGEMARCMLKLRDDHRVYLLNQKIEDLQGQINGLEKRNQEYYDQLVKTDKAMVESRCSNKHKDQNGNEVTLEACFQIGKLKSKRNSGVNSSAIDKTSNSRRKTYRWWAKVKSMDMFLCGHSTNPT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 378206 380630 + Lsi02G000350.1 Lsi02g00035 654777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00035 365 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 23 106 IPR011684 GO:0003779
Lsi02g00035 365 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g00035 365 Coils Coil 257 284 - -
Lsi02g00035 365 PANTHER PROTEIN NETWORKED 4A 34 363 - -
Lsi02g00035 365 Pfam KIP1-like protein 34 99 IPR011684 GO:0003779
Lsi02g00035 365 Coils Coil 199 233 - -
Lsi02g00035 365 PANTHER KINASE-INTERACTING FAMILY PROTEIN 34 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00035 - - - csv:101212854 600.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00035 Lsi-Chr2:378206 Lsi03g00240 Lsi-Chr3:2978822 0 dispersed
Lsi02g00035 Lsi-Chr2:378206 Lsi05g01629 Lsi-Chr5:23937429 1.85E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g974 . . Bda06g00834 . . . . . . . . . . . . Cpe20g00047 . . . . . . . . . . . . . . . . . . . Lsi02g00035 Csa01g00512 Chy12g01573 Cme12g02031 . Blo15g00049 . . Bpe07g01060 . . . . . . Cma13g01106 . Car13g00939 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007793 1 2 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00035 Lsi_Chr02 FPKM 9.794947 10.837157 8.716952 6.69238 11.846091 10.285383 12.277746 9.9293 9.041171 10.456248