Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00036 ATGAAGGGAAGTGTGTGTTTCCTCTGCGCTCCTCTTCCATTTCTTCCAAACCAAACTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCCATTTCTAAACCTAGCCCTATTCATGCTCACACTCACGATCAAGAGATTCGGGTTTGCACCAATCGCACTTGCCGCCGTCAAGGTTCCTTTCACACACTCGAAATTCTCAACGCCCTTGCACCTCCCACCATTACTGTCAATTCCTCTGGTTGTTTAGGAAGGTGTGGCGCTGGCCCCAACGTTGCTGTTTTGCCTGATGGATTCGTCGTCGCTCATTGTGGCACGCCTGCTCGAGCTGCCGAGGTCATCATCCAATTATCTGGTGGAGACTCAGATTCTGTTGCTATCTCAAAGAGCTTGGAGGCTCTTGCTCTGAGGAAGAGAGCTCAATGTGAGTTGGAGGACGGGAATTTCTCCCAGGCCGAGCTACTTCTTTCGCAGTCTGAGAATTTTGTTCAGAATAATACTCTATGTATGATGCCCGGCTTCAATTTGTTGCAGGCGATAGGTTTAAAACCATGTGGAGGTATCCATATAATATTCAAGGACAGGTCCATCGTAAGATTGACACTTGGAAATCATTCTGGTGCTCTCGAAGATGCAAATGAAGCTCTAAGAGTAGCTCCTCGATATCTCGAGGCTTACATTTGCCAAGGTGATGCATTCATAGCTATGGACCATTTTGATTCAGCTGAGACGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGCCGTTCAAAGTCATTCAAGGCACGAGTTGCTAAACTTCAGGCGAAGCTCAGTGCTGTGAGAACACAATAA 849 45.82 MKGSVCFLCAPLPFLPNQTSFSSSSSSSSSSSNSISKPSPIHAHTHDQEIRVCTNRTCRRQGSFHTLEILNALAPPTITVNSSGCLGRCGAGPNVAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSVAISKSLEALALRKRAQCELEDGNFSQAELLLSQSENFVQNNTLCMMPGFNLLQAIGLKPCGGIHIIFKDRSIVRLTLGNHSGALEDANEALRVAPRYLEAYICQGDAFIAMDHFDSAETSYSTALEIDPSIRRSKSFKARVAKLQAKLSAVRTQ 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 379730 386414 - Lsi02G000360.1 Lsi02g00036 654778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00036 282 MobiDBLite consensus disorder prediction 23 41 - -
Lsi02g00036 282 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 16 281 - -
Lsi02g00036 282 SUPERFAMILY Thioredoxin-like 48 119 IPR036249 -
Lsi02g00036 282 MobiDBLite consensus disorder prediction 23 47 - -
Lsi02g00036 282 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Lsi02g00036 282 Gene3D Glutaredoxin 47 128 - -
Lsi02g00036 282 SUPERFAMILY TPR-like 135 273 IPR011990 GO:0005515
Lsi02g00036 282 SMART tpr_5 192 225 IPR019734 GO:0005515
Lsi02g00036 282 SMART tpr_5 226 259 IPR019734 GO:0005515
Lsi02g00036 282 SMART tpr_5 136 169 IPR019734 GO:0005515
Lsi02g00036 282 CDD TRX_Fd_family 50 117 - -
Lsi02g00036 282 Gene3D Tetratricopeptide repeat domain 129 282 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00036 - - - bhj:120082956 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00036 Lsi-Chr2:379730 Lsi09g01301 Lsi-Chr9:20871200 5.21E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g975 . . Bda06g00835 . . . . . . . . . . . . Cpe20g00046 . . . . . . . . . . . . . . . . . . . Lsi02g00036 . Chy12g01572 Cme12g02030 . Blo15g00048 . . . . . . . . . Cma13g01107 . Car13g00940 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012828 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00036 Lsi_Chr02 FPKM 9.001235 10.635993 297.612091 300.020752 2771.832764 2438.973389 2558.943604 20.607513 19.37639 18.341455