Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00037 ATGAGGTTTCTCAGCTACTTCCCTATATTGCTCGTTTCTTCTGTAGTTTCTTGCACTAACTTTGATGAATTTTTTCAACCAAATTGGGAACCACATCATCTCCTCATTGAAGGAGATTACGCAAACTTAACACTTGACTCTCTTTCTGGTTGTGGATATGAATCCAAGAAGAAGTATCTATTCGGGGAAGCCACTGTCCAAATCAAACTCATGGAGGGCGACTCTGCAGGGACAGTGACAACCTTCTACATGTCTTCAGAGGGGCTAAACCACGATGAGCTAGATTTTGAGTTTCTGGGAAATGTTTCGGGACAACCATATTTGTTTCAAACCAATGTGTATACGAATGGCACTGAAAATAGAGAGCAAAGACACACTCTTTGGTTTGACCCCACAACCGATTTCCATACTTATTCCCTCTTCTGGAATCGCCACTCTATAGTACGATTGGGCAACACAAGAAGGAGCAATGCGCCATTTGTGGCAACATTTCGGTCTTTTGAGATTAAAGCTTGCGAATTGGAGCCAGAGACGGAGGATGCAGAGGCCAAGCGTGGACTGTCAAGGCAATTTTGGTGGGACAAACCATCGTTAAGAGGGCTAAGCAGGCACAAAGCACATCAACTCAAGTGGGTTCGTGCAAGGCATTTGGTATACGATTTATTGTAA 669 43.65 MRFLSYFPILLVSSVVSCTNFDEFFQPNWEPHHLLIEGDYANLTLDSLSGCGYESKKKYLFGEATVQIKLMEGDSAGTVTTFYMSSEGLNHDELDFEFLGNVSGQPYLFQTNVYTNGTENREQRHTLWFDPTTDFHTYSLFWNRHSIVRLGNTRRSNAPFVATFRSFEIKACELEPETEDAEAKRGLSRQFWWDKPSLRGLSRHKAHQLKWVRARHLVYDLL 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 387156 388206 + Lsi02G000370.1 Lsi02g00037 654779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00037 222 ProSitePatterns Glycosyl hydrolases family 16 active sites. 93 103 IPR008263 GO:0004553|GO:0005975
Lsi02g00037 222 Pfam Glycosyl hydrolases family 16 25 147 IPR000757 GO:0004553|GO:0005975
Lsi02g00037 222 Gene3D - 150 222 - -
Lsi02g00037 222 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 220 IPR013320 -
Lsi02g00037 222 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lsi02g00037 222 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 220 IPR000757 GO:0004553|GO:0005975
Lsi02g00037 222 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 148 IPR044791 GO:0004553
Lsi02g00037 222 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 153 220 IPR044791 GO:0004553
Lsi02g00037 222 Gene3D - 9 149 - -
Lsi02g00037 222 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 153 220 - -
Lsi02g00037 222 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 10 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00037 K08235 E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] - csv:101216635 379.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00037 Lsi-Chr2:387156 Lsi11g01491 Lsi-Chr11:23408163 1.34E-74 dispersed
Lsi02g00628 Lsi-Chr2:5586570 Lsi02g00037 Lsi-Chr2:387156 2.07E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00037 Csa01g00513 Chy12g01571 Cme12g02029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014510 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00037 Lsi_Chr02 FPKM 3.666667 2.477494 2.620593 3.389754 4.663572 3.307518 6.689261 0.789324 0.857157 1.839729