Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00042 ATGCCACGGGAGAGGGATGGAGTTGTCTTTTTCGAAGACCTACCCGGTGCTTTATATGTAGGGTGTGGGGAGCATTATAGGGTGTCCTTCCAAAAGCAAGTGAAAAGAGGCGAGGCGCAGGCGAAACCAAGGGCTCTCTCTCTCTCGGCTGTTGCTCTTTATTATTACCCTCTCTGGCTCTCTCGCTCTGTAAAGCAAACCCAAAGCAAAGCAAAGCAAAGCGACGCGACTCAGTGCCTCTCTGTTTCTTTCTTCTTTCCCTTTTCGTTTTTCCATCACACCGCAGCCGGCGCTTTTCCGGCTACCTGCTCGTCTAAGTTGTCACATATCAATTCTAACTTGCCAGGTTCAGCTCTCCATTTTCTTGTAGTGATCATGGGGAGGAAGAAGAGGGCTGATGCTGGTGGTGAAAGTTCTGAGTCTCAAGATGGTGGTGGTCGTGGCTCCCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGAGAGTGGGTACCAGGGTGGTAGAGGTTGGAGTTCTCAAGGGGGACGTGGAGGTCAAGGTGGTGGTGGTCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGGCCATATCAGCATAGGGGACGCAATAACTATGGTGGTGGTAATCGCGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGTCTCATCTGTGGCGAGTTCTTCCTCCCATCCATCTGACACTTCATCAATTGATCAACAATTTCAACAATTTTCCATTCAACAGGAATCTTCTCAAAGCCAAGCTATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCACTGAGGCCAGGAAAGGGTAGCTCTGGCATAAGGTGTATTGTTAAAGCTAATCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAACCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGAGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAAAAAGAATTTAAAGTTGTGATCAAATTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGCGAGTTGCCTACTTCAAGGCATAACTATTACTATACACCTCTGTATTGTCCAGTGGCCCGATCATTTTATTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGACTCTCCCTTAATATTGGTATTAGCCCCACCCTTTGTTCGTTGCATTTTATTTTATGTTTTGCCCTTTGTGTTTCGTTTTGGTTAAGTGACCATTCTCTAATGGATGCAGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTCAATCGTGATGTGTCATCCAGACCATTATCTGATGCCGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGAAACATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAGGCAACAAGGGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTATGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGGCCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTTAATGAAAGACAAATAACTGCCCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAGGAAGACATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTCGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTAACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGATACCATGATGCCATGAGTATTCTCCAACCCCAGGGCAAGGAGCTTGATTTGCTTATTGTTGTATTGCCGGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTCGGGGGAAGGAATACAGTACTCGTCGATGCGTTATCTAGGCGCATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGACCTTTTCAAAACATGGCAGGATCCTGTTAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGCATTTTCTTTTATCTCTTATCTATTGTCTGGTTGTTAAGAAAACATTACTTTTATATGATGTTTGCTTGATGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGTTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACATTTGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAACAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAACATATTGCCTGTTGGTGCATACCAACTGAAAAATCCACTAGTAGCAAGAGAGTTGTTTTTACTATCGAAGCACAATTTCTTAATTCATAGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTATGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGACGGATTACAAACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGCACTCGCTCTGTTTCTATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCTGAAACCTCTGACAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCATTGGTGGTGCTCGTAGTACACGGGCACCGGGGTTGAATGCTGCCGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3816 45.28 MPRERDGVVFFEDLPGALYVGCGEHYRVSFQKQVKRGEAQAKPRALSLSAVALYYYPLWLSRSVKQTQSKAKQSDATQCLSVSFFFPFSFFHHTAAGAFPATCSSKLSHINSNLPGSALHFLVVIMGRKKRADAGGESSESQDGGGRGSQRSAERRDGPQQHGESGYQGGRGWSSQGGRGGQGGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHRGRNNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPVSSVASSSSHPSDTSSIDQQFQQFSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHNYYYTPLYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIGISPTLCSLHFILCFALCVSFWLSDHSLMDADMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRHFLLSLIYCLVVKKTLLLYDVCLMDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPVGAYQLKNPLVARELFLLSKHNFLIHSTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGIGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 412939 420439 - Lsi02G000420.1 Lsi02g00042 654784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00042 1271 Pfam Mid domain of argonaute 755 829 IPR032473 -
Lsi02g00042 1271 SUPERFAMILY PAZ domain 552 712 IPR036085 GO:0005515
Lsi02g00042 1271 SUPERFAMILY Ribonuclease H-like 843 1219 IPR012337 -
Lsi02g00042 1271 Gene3D - 917 1271 IPR036397 GO:0003676
Lsi02g00042 1271 PANTHER PROTEIN ARGONAUTE 1A 1130 1270 - -
Lsi02g00042 1271 PANTHER PROTEIN ARGONAUTE 1A 206 521 - -
Lsi02g00042 1271 SMART PAZ_2_a_3 562 694 IPR003100 GO:0005515
Lsi02g00042 1271 MobiDBLite consensus disorder prediction 132 250 - -
Lsi02g00042 1271 Pfam Glycine-rich region of argonaut 198 305 IPR024357 -
Lsi02g00042 1271 ProSiteProfiles PAZ domain profile. 558 672 IPR003100 GO:0005515
Lsi02g00042 1271 SMART DUF1785_2 474 526 IPR014811 -
Lsi02g00042 1271 CDD Piwi_ago-like 716 1218 IPR045246 -
Lsi02g00042 1271 Gene3D - 736 911 - -
Lsi02g00042 1271 PANTHER PROTEIN ARGONAUTE 1A 546 1109 - -
Lsi02g00042 1271 Pfam Piwi domain 849 1017 IPR003165 GO:0003676
Lsi02g00042 1271 Pfam Piwi domain 1040 1218 IPR003165 GO:0003676
Lsi02g00042 1271 Pfam PAZ domain 562 687 IPR003100 GO:0005515
Lsi02g00042 1271 Gene3D paz domain 551 676 - -
Lsi02g00042 1271 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1130 1270 - -
Lsi02g00042 1271 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 206 521 - -
Lsi02g00042 1271 SMART Piwi_a_2 848 1219 IPR003165 GO:0003676
Lsi02g00042 1271 CDD PAZ_argonaute_like 557 671 - -
Lsi02g00042 1271 Pfam Argonaute linker 2 domain 698 744 IPR032472 -
Lsi02g00042 1271 MobiDBLite consensus disorder prediction 262 305 - -
Lsi02g00042 1271 ProSiteProfiles Piwi domain profile. 848 1219 IPR003165 GO:0003676
Lsi02g00042 1271 MobiDBLite consensus disorder prediction 262 312 - -
Lsi02g00042 1271 Pfam Argonaute linker 1 domain 476 519 IPR014811 -
Lsi02g00042 1271 Pfam N-terminal domain of argonaute 324 457 IPR032474 -
Lsi02g00042 1271 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 546 1109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00042 Lsi-Chr2:412939 Lsi05g01645 Lsi-Chr5:24088056 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00042 K11593 - csv:101212130 1833.15