Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00043 ATGACCACCACTCAACAACTCTTTGTTCTGTCTCTCATTTCCCTCACTCTCCTCTCCGCCGCAGTTTCCTATTCAGAAGCCCATGGCTTGAAGATGAACGCCATTGACAGATGCTGGAGATCAAACCCATACTGGAGAAGAAACAGGCAACAACTCGCCGTTTGTTCAGTTGGGTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCAACAATGATCAAACCCAAAGTCTGGATCACATTCCGAAAAGACATGAATATTGTGCTTAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCTACCGTCCACATCACCGGGAATGCGTGTCTGATGGTTTTCAAGGCCACCAACATCATAATCCACGGCCTTATTATCCACCACTGCAGGGCTCAGGCGGCGGGTCAAGTCATGGGCCCCAATTCGAAGATCATTTCACTTGGACACGTGGATGGTGATGCCATTCGTTTAGTAACGGCCTCCAAAGTGTGGGTTGACCACAACACGCTGTACCGCTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGACCAAGACAAGGTTATTCTTCTTGGTCACGATGACGGCTATGTCCGAGATCGGAACATGAGAGTCACTGTCGTCTATAACCATTTTGGACCCAATTGCAACCAGAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCGAGCGTCAAGAGCGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAGATTATATGGAGCACAGGGAAGGTAGAGGAGACTAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTCATTTGCACAAATTGGTGTGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGGTTTCCAGTTGCAGATGCCAAGTGGCTCAGATCATTAACAAGCTCCTCCGGGGCATTACGCTGCTCATCAAACTCAAAATGTTGA 1146 48.95 MTTTQQLFVLSLISLTLLSAAVSYSEAHGLKMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFRKDMNIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGQVMGPNSKIISLGHVDGDAIRLVTASKVWVDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGASFAQIGVGRGGVKPNYNAQQRFPVADAKWLRSLTSSSGALRCSSNSKC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 427990 429978 + Lsi02G000430.1 Lsi02g00043 654785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00043 381 Gene3D - 32 374 IPR012334 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Lsi02g00043 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Lsi02g00043 381 SMART amb_all 109 306 IPR002022 -
Lsi02g00043 381 PANTHER PECTATE LYASE 16 378 - -
Lsi02g00043 381 SUPERFAMILY Pectin lyase-like 32 372 IPR011050 -
Lsi02g00043 381 PANTHER PECTATE LYASE 18-RELATED 16 378 IPR045032 GO:0030570
Lsi02g00043 381 Coils Coil 381 381 - -
Lsi02g00043 381 Pfam Pectate lyase 122 300 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00043 Lsi-Chr2:427990 Lsi09g01161 Lsi-Chr9:18677108 1.12E-92 dispersed
Lsi02g00043 Lsi-Chr2:427990 Lsi02g00573 Lsi-Chr2:5129704 8.17E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00043 K01728 - csv:101217103 684.485