Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00043 | ATGACCACCACTCAACAACTCTTTGTTCTGTCTCTCATTTCCCTCACTCTCCTCTCCGCCGCAGTTTCCTATTCAGAAGCCCATGGCTTGAAGATGAACGCCATTGACAGATGCTGGAGATCAAACCCATACTGGAGAAGAAACAGGCAACAACTCGCCGTTTGTTCAGTTGGGTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCAACAATGATCAAACCCAAAGTCTGGATCACATTCCGAAAAGACATGAATATTGTGCTTAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCTACCGTCCACATCACCGGGAATGCGTGTCTGATGGTTTTCAAGGCCACCAACATCATAATCCACGGCCTTATTATCCACCACTGCAGGGCTCAGGCGGCGGGTCAAGTCATGGGCCCCAATTCGAAGATCATTTCACTTGGACACGTGGATGGTGATGCCATTCGTTTAGTAACGGCCTCCAAAGTGTGGGTTGACCACAACACGCTGTACCGCTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGACCAAGACAAGGTTATTCTTCTTGGTCACGATGACGGCTATGTCCGAGATCGGAACATGAGAGTCACTGTCGTCTATAACCATTTTGGACCCAATTGCAACCAGAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCGAGCGTCAAGAGCGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAGATTATATGGAGCACAGGGAAGGTAGAGGAGACTAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTCATTTGCACAAATTGGTGTGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGGTTTCCAGTTGCAGATGCCAAGTGGCTCAGATCATTAACAAGCTCCTCCGGGGCATTACGCTGCTCATCAAACTCAAAATGTTGA | 1146 | 48.95 | MTTTQQLFVLSLISLTLLSAAVSYSEAHGLKMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFRKDMNIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGQVMGPNSKIISLGHVDGDAIRLVTASKVWVDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGASFAQIGVGRGGVKPNYNAQQRFPVADAKWLRSLTSSSGALRCSSNSKC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 427990 | 429978 | + | Lsi02G000430.1 | Lsi02g00043 | 654785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00043 | 381 | Gene3D | - | 32 | 374 | IPR012334 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 55 | 72 | IPR018082 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 261 | 280 | IPR018082 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 181 | 202 | IPR018082 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 283 | 302 | IPR018082 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 117 | 133 | IPR018082 | - | |
Lsi02g00043 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Lsi02g00043 | 381 | SMART | amb_all | 109 | 306 | IPR002022 | - | |
Lsi02g00043 | 381 | PANTHER | PECTATE LYASE | 16 | 378 | - | - | |
Lsi02g00043 | 381 | SUPERFAMILY | Pectin lyase-like | 32 | 372 | IPR011050 | - | |
Lsi02g00043 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 16 | 378 | IPR045032 | GO:0030570 | |
Lsi02g00043 | 381 | Coils | Coil | 381 | 381 | - | - | |
Lsi02g00043 | 381 | Pfam | Pectate lyase | 122 | 300 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00043 | Lsi-Chr2:427990 | Lsi09g01161 | Lsi-Chr9:18677108 | 1.12E-92 | dispersed | |
Lsi02g00043 | Lsi-Chr2:427990 | Lsi02g00573 | Lsi-Chr2:5129704 | 8.17E-107 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00043 | K01728 | - | csv:101217103 | 684.485 |