Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00047 CGGCTTTTGGGTGAAACGCCGGAGAAGACGAAAATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACCCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACTGGTTGATTTTCTCTCTTAATTGTGTATTTAGGCGTAATTTTGCTAACTATGTCTGTGGAGACAATTTGGATTTATTGAATGATTCCAACTTCACGCGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGGTCGTCGACTAGTTCTCGTGTATTCTGAACTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGATCGGAGCTTCGCCTTGGCCTTAAAGAAAACTCTGGCTAA 696 45.4 RLLGETPEKTKMTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENSG 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 444584 447809 + Lsi02G000470.1 Lsi02g00047 654789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00047 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 211 IPR000504 GO:0003723
Lsi02g00047 231 PANTHER NUCLEOLAR PROTEIN 8 25 229 - -
Lsi02g00047 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 218 IPR000504 GO:0003723
Lsi02g00047 231 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 25 229 - -
Lsi02g00047 231 SUPERFAMILY RNA-binding domain, RBD 136 222 IPR035979 GO:0003676
Lsi02g00047 231 Gene3D - 132 223 IPR012677 -
Lsi02g00047 231 SMART rrm1_1 135 214 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00047 - - - csv:101214703 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00047 Lsi-Chr2:444584 Lsi04g01255 Lsi-Chr4:19552123 1.89E-17 dispersed
Lsi02g00047 Lsi-Chr2:444584 Lsi01g01405 Lsi-Chr1:12198357 1.86E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00047 Csa01g00522 Chy12g01563 Cme12g02019 Blo13g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013007 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00047 Lsi_Chr02 FPKM 0.350811 0.330943 0.088274 0.604377 0.219531 0.259568 0.368901 0.072296 0.227365 0.092043