Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00060 ATGGAGAAGAAGGAATATGATAATAATCCCCAACCTCCTCTTGACATCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGTGAAACCATCGAATGGCTTCTTCAGCAAGCCGAGCCTGCCGTTATCGCCGCCACCGGAACCGGTACAATACCTGCAAACTTCAACTCTCTCAATACGTCGTTAAGAAGATCGGCCACAAGCATTTCTTTACCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAATGAATAATATGGGTCAATTAATGACGACGCAACCAAAAGAAGATCATCACTATCTACAACAATCCACCACAGGCCTAATCCCCGCCACTACTATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGCCGGCGGAGGCGACTCTTTATGGAGGCTTCAGTCTGCCAACAACCAAGACGCCGCTTTATACAGATCAGGACAACCCTCCGGTGGCTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTGTCATTGGGACCCACTGCCGGAGGTGGACGTGGAACCGTGAATGATGACGGACACTTGAATATCTACGCCGCCCAAAATCCGCCGCATGGGGCGGCGCCTGACACTGGCGTCTCCTAA 786 51.53 MEKKEYDNNPQPPLDISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMGQLMTTQPKEDHHYLQQSTTGLIPATTIPANFWMLSDANNQLLAGGGDSLWRLQSANNQDAALYRSGQPSGGLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTVNDDGHLNIYAAQNPPHGAAPDTGVS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 554602 557155 - Lsi02G000610.1 Lsi02g00060 654802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00060 261 MobiDBLite consensus disorder prediction 21 39 - -
Lsi02g00060 261 ProSiteProfiles TCP domain profile. 27 81 IPR017887 -
Lsi02g00060 261 MobiDBLite consensus disorder prediction 1 39 - -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP23 136 250 - -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP23 15 132 - -
Lsi02g00060 261 Pfam TCP family transcription factor 25 130 IPR017887 -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 136 250 IPR005333 GO:0003700
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 132 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00060 - - - csv:101218047 419.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00060 Lsi06g01472 CCT
Lsi02g00060 Lsi06g01472 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01315 Lsi-Chr1:11414996 Lsi02g00060 Lsi-Chr2:554602 1.72E-37 dispersed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00710 Lsi-Chr4:6498851 2.82E-44 dispersed
Lsi05g01274 Lsi-Chr5:20473303 Lsi02g00060 Lsi-Chr2:554602 1.75E-34 dispersed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00434 Lsi-Chr4:4137810 4.23E-60 wgd
Lsi02g00060 Lsi-Chr2:554602 Lsi06g01472 Lsi-Chr6:25231360 5.50E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24726 PF03634 TCP 5.60E-36 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00060 Lsi_Chr02 FPKM 32.788433 34.756935 27.282892 28.192266 26.546309 25.387571 29.621817 28.593872 26.26536 26.338856