Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00060 ATGGAGAAGAAGGAATATGATAATAATCCCCAACCTCCTCTTGACATCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGTGAAACCATCGAATGGCTTCTTCAGCAAGCCGAGCCTGCCGTTATCGCCGCCACCGGAACCGGTACAATACCTGCAAACTTCAACTCTCTCAATACGTCGTTAAGAAGATCGGCCACAAGCATTTCTTTACCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAATGAATAATATGGGTCAATTAATGACGACGCAACCAAAAGAAGATCATCACTATCTACAACAATCCACCACAGGCCTAATCCCCGCCACTACTATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGCCGGCGGAGGCGACTCTTTATGGAGGCTTCAGTCTGCCAACAACCAAGACGCCGCTTTATACAGATCAGGACAACCCTCCGGTGGCTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTGTCATTGGGACCCACTGCCGGAGGTGGACGTGGAACCGTGAATGATGACGGACACTTGAATATCTACGCCGCCCAAAATCCGCCGCATGGGGCGGCGCCTGACACTGGCGTCTCCTAA 786 51.53 MEKKEYDNNPQPPLDISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMGQLMTTQPKEDHHYLQQSTTGLIPATTIPANFWMLSDANNQLLAGGGDSLWRLQSANNQDAALYRSGQPSGGLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTVNDDGHLNIYAAQNPPHGAAPDTGVS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 554602 557155 - Lsi02G000610.1 Lsi02g00060 654802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00060 261 MobiDBLite consensus disorder prediction 21 39 - -
Lsi02g00060 261 ProSiteProfiles TCP domain profile. 27 81 IPR017887 -
Lsi02g00060 261 MobiDBLite consensus disorder prediction 1 39 - -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP23 136 250 - -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP23 15 132 - -
Lsi02g00060 261 Pfam TCP family transcription factor 25 130 IPR017887 -
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 136 250 IPR005333 GO:0003700
Lsi02g00060 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 132 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00060 Lsi06g01472 CCT
Lsi02g00060 Lsi06g01472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01315 Lsi-Chr1:11414996 Lsi02g00060 Lsi-Chr2:554602 1.72E-37 dispersed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00710 Lsi-Chr4:6498851 2.82E-44 dispersed
Lsi05g01274 Lsi-Chr5:20473303 Lsi02g00060 Lsi-Chr2:554602 1.75E-34 dispersed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00434 Lsi-Chr4:4137810 4.23E-60 wgd
Lsi02g00060 Lsi-Chr2:554602 Lsi06g01472 Lsi-Chr6:25231360 5.50E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24726 PF03634 TCP 5.60E-36 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00060 - - csv:101218047 419.083