Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00067 ATGGCGACGTCAGGACAGTGGCTGGAGAAGGCGTTGGACGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCGGGCTTGGTCTCGTACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATTCTAACGCTATGGACCATGCACTCAAACTGTTCGAGACAATGCTCCACCCAAATGTCATTTCTTGGAATATCATTATCTCGGGTTTCCACCACAAGTTCTTACATTTGGACTCGTGGAGAACATTTTGTAGGATGCATTTCCTGGGTTTTGAACCTAGTGAGATAACATATGGGAGCGTTTTATCTGCTTGTGCTGCCATTCAAGCCCCAATGTTTGGTAAGCAGGTTTATTCTCTTGCGGTGAGAAATGGGTTCTTTGTTAATGGTTATGTTCGAGCCGGAATGATTGATTTATTTGCAAAAGATTCTAGTTTTCTGGATGCTCTAAGGGTATTTCGTGATGTTGATTGTGAGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCTGTAAGAAATGGTGAGAACTTGATGGCTCTGGATCTTTTCAACACAATGTGTAGTGGATTACTGGAGCCTAATAGTTTCACCTTTTCCAGTGTTCTAACTGCGTGTGCTGCACTTGAAGATCTTGAATCTGGGAAAAGAGTTCAAGGGAGAGTGATTAAATGTGGTGGAGAAGATGTTTTTGTTGAGACAGCCCTTATTGATTTGTACACCAAGTGTGGAGATATGGATGGAGCTGTTAAGACCTTCTTGCGGATGCCCATTCGCAATGTGGTCTCTTGGACTGCTATAATATCTGGCTTTGTGCAAAATAATGATTATTTAATGGCCCTCAAGTTTTTTGAAGATATGAGAAAAGTGGGAGAGGAAATTAATAGCTACACAGTTACTAGCGTGTTAACTGCATGTGCTAATCCAGCCATGACAAAAGAAGCAACCCAACTTCATGCCTGGATTCTAAAAGCTGGTTTTTCTTCACATGCAGTGGTGGCGGCTGCTTTAATTAACATGTATTCAAAAACAGGAGCAATTGATCTTTCATTGATGGTTTTCAGAGAGATGGACAACCAAAGGAATCTTAGTTCTTGGACAGCTATGATAACTTCATTTGCACAGAATAATGATAAAGAGAAAGCAAGTGAATTGTTCCCAAAAATGTTAAGGGAAAGTGTGGGACCAGATACATTTTGTACTTCCAGCGTCTTGAGTGTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACACACTTAAAACTGGATTAATATTTGATGTTTCTGTTGGCAGTTCTCTTTTTACAATGTATTCCAAATGTGGCCATCTAATGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCGTGGGCATCAATGATTTCCTGTTTCTTAGAACATGGCTATGCAAAAGAGGCCATTCAATTATTTAGAGAAATGTTGTTTGAAGAATATGTACCTGATCATACGACTTTAAGTGTAGTCCTAACTGCCTGTTCTGTCCTTCATTCTATTCAAATAGGCAGAGAAATTCATGGTTACTCTGTTCGTGAGGGACTTGGCAAAGACGTAGCTGTTGGAAGTTCGCTTGTGACTATGTACGCGAAATGTGGCAACCTGGAATTGGCTAGGAGGGTGTTTGAAACATTGCCCCAGAAAGATCATATTGCATGCTCTTCATTGGTTTCAGGATATGCTCAACAGAAGCGCAATGAAGAGGCTCTTTTGCTATTCCACGATCTGCTGGTGGCTGGCTTAGCCATCGATTCCTTCTCAATCTCATCCGTACTGGGAGCTATTGCGCTTTTAAATAGGCCTGCAATTGGGATTCAAATCCATGCACTCATTATGAAAGTAGCCTTGGAGAAAGATGTTTCTGTTGGGAGTTCGCTAGTAATGGTATACTCCAAATGTGGAAGTATAGAAGACTGCTGCAAAGCATTTGGGCAGATTGGAAAGCCTGATTTGATAGCCTGGACGGCCATGATTGTCAGTTATGCCCAACATGGGAAGGGTGCTGAAGCTTTATGTGTCTATGAACTTATGAAGAAAGAAGGATTCAAGCCTGATCCAGTCACCTTTGTTGGGGTTTTGTCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCCTATTTCCATCTTAATTCAATGGTGAAAGACTATGGTATACAGCCAGGATATCGACATTATGCATGTATGGTAGATCTTCTTGGGCGGTGTGGGAAACTGAAAGAGGCAGAAGAACTGATTAACCATATGCCTATTGAACCTGACGCTCTCATTTGGGGAACGCTTCTTGCTGCTTGTAAAGTACATGGAGATATTGAACTTGGAAAACTAGCAGCAAGAAAGGTGATGGAGTTGAAGCCAAGTGATACTGGTGCTTATGTCTCCCTTTCAAACATCTGTGCTGATATGGGCCTGTGGGAAGAGGTCCTGAACGTTAGAAGCCTAATGAAGGGAGTTGGAGTGACGAAAGAACCTGGTTGGAGCTTTTTATATTGTCACTATGTTAGAAGTCTCCGCATCGTCGCTTTGAGAACGTTTTCAGCAATCCTTGGCTTTCTATTGAATTGGCGTTTTATGGTTTCCCAGCAGGATGAACTGCTTCACTGGAAGTCAATTTTCTGCGCTTGGTTTGGTTTTGGAATTAACATCATAGGTCAGGAAGTTGGGAAAAGTGTGATAGATGAGTATTTGCGGCTGCGAGGCCACTCTGACCTCTGTAGCAAAACGTTGGATGTTCCATCTTCAACCTTACATGCCTATGTCAAGCCACCCTCCCATGAAGGTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAGACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTAGCTCTAGTAACGTGGAAAATCAGGTTTCATCGGACACTCGCAATTCATCGTCTGGCAAAGGGAATCAAAGTTCATCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTTTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGACTAGTCAGCAATTGTTTATCATGCGGCAAGATTGTATGTGAACAAGAGGGAGAAGGGCCATGCAGTTTTTGCGGTTCCCTTGTGCTGAGAGAAGGGAGCACCTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGATTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATCGATGATCAAAGTGATTATTACCAGTTCGAGGGTAATAGCTGGTTGTCTAACGAGGAAAAGGAACTTTTGAGAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATGCTTCTGAACTTGAATCACGCAACAATATCTTGCGGCCACCAGATGAAAGAGAAGTGAACAGGATTAAACCAAACCCATCTCTTCAAATACATCCTGTGTTTTTAGATCCAGGACCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTAAGCAAAAAAGGCATTTGTTTGGAAATTACTGGAAGGGTGCAGCATGATCGCGATGAATTGAAGCATCTTATGATGGAAAATGATTTGAAAACGTCATTCAATAGGAAAGCTTGGGAAGGGCTTTCTGTGAATCACCAAGCAGCAATTGCAGGACAATTATGA 3822 42.2 MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDSNAMDHALKLFETMLHPNVISWNIIISGFHHKFLHLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFVNGYVRAGMIDLFAKDSSFLDALRVFRDVDCENVVCWNAIVSAAVRNGENLMALDLFNTMCSGLLEPNSFTFSSVLTACAALEDLESGKRVQGRVIKCGGEDVFVETALIDLYTKCGDMDGAVKTFLRMPIRNVVSWTAIISGFVQNNDYLMALKFFEDMRKVGEEINSYTVTSVLTACANPAMTKEATQLHAWILKAGFSSHAVVAAALINMYSKTGAIDLSLMVFREMDNQRNLSSWTAMITSFAQNNDKEKASELFPKMLRESVGPDTFCTSSVLSVTDCITFGRQIHCYTLKTGLIFDVSVGSSLFTMYSKCGHLMEAFQVFENMPEKDNVSWASMISCFLEHGYAKEAIQLFREMLFEEYVPDHTTLSVVLTACSVLHSIQIGREIHGYSVREGLGKDVAVGSSLVTMYAKCGNLELARRVFETLPQKDHIACSSLVSGYAQQKRNEEALLLFHDLLVAGLAIDSFSISSVLGAIALLNRPAIGIQIHALIMKVALEKDVSVGSSLVMVYSKCGSIEDCCKAFGQIGKPDLIAWTAMIVSYAQHGKGAEALCVYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHYACMVDLLGRCGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELKPSDTGAYVSLSNICADMGLWEEVLNVRSLMKGVGVTKEPGWSFLYCHYVRSLRIVALRTFSAILGFLLNWRFMVSQQDELLHWKSIFCAWFGFGINIIGQEVGKSVIDEYLRLRGHSDLCSKTLDVPSSTLHAYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKATSSSNVENQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQFEGNSWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDASELESRNNILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVSKKGICLEITGRVQHDRDELKHLMMENDLKTSFNRKAWEGLSVNHQAAIAGQL 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 578395 584396 - Lsi02G000670.1 Lsi02g00067 654809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00067 1273 MobiDBLite consensus disorder prediction 958 1006 - -
Lsi02g00067 1273 PANTHER OS09G0413300 PROTEIN 420 537 - -
Lsi02g00067 1273 PANTHER OS09G0413300 PROTEIN 638 848 - -
Lsi02g00067 1273 PANTHER OS09G0413300 PROTEIN 522 636 - -
Lsi02g00067 1273 MobiDBLite consensus disorder prediction 1200 1220 - -
Lsi02g00067 1273 Pfam PPR repeat family 169 216 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat family 67 115 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat family 268 317 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat family 468 515 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat family 670 718 IPR002885 -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lsi02g00067 1273 Coils Coil 1125 1152 - -
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 418 529 IPR011990 GO:0005515
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 646 852 IPR011990 GO:0005515
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 18 123 IPR011990 GO:0005515
Lsi02g00067 1273 MobiDBLite consensus disorder prediction 942 1006 - -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Lsi02g00067 1273 PANTHER OS07G0578800 PROTEIN-RELATED 30 322 IPR045215 GO:0003723|GO:0009451
Lsi02g00067 1273 PANTHER OS07G0578800 PROTEIN-RELATED 420 537 IPR045215 GO:0003723|GO:0009451
Lsi02g00067 1273 PANTHER OS07G0578800 PROTEIN-RELATED 638 848 IPR045215 GO:0003723|GO:0009451
Lsi02g00067 1273 PANTHER OS07G0578800 PROTEIN-RELATED 522 636 IPR045215 GO:0003723|GO:0009451
Lsi02g00067 1273 PANTHER OS07G0578800 PROTEIN-RELATED 324 417 IPR045215 GO:0003723|GO:0009451
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 741 IPR002885 -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lsi02g00067 1273 PANTHER OS09G0413300 PROTEIN 30 322 - -
Lsi02g00067 1273 PANTHER OS09G0413300 PROTEIN 324 417 - -
Lsi02g00067 1273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Lsi02g00067 1273 Pfam E motif 788 848 IPR046848 -
Lsi02g00067 1273 Pfam Putative zinc finger motif, C2HC5-type 1026 1066 IPR009349 GO:0005634|GO:0006355|GO:0008270
Lsi02g00067 1273 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Lsi02g00067 1273 TIGRFAM PPR: pentatricopeptide repeat domain 471 504 IPR002885 -
Lsi02g00067 1273 TIGRFAM PPR: pentatricopeptide repeat domain 674 706 IPR002885 -
Lsi02g00067 1273 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Lsi02g00067 1273 MobiDBLite consensus disorder prediction 1205 1219 - -
Lsi02g00067 1273 Coils Coil 1081 1101 - -
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 237 320 IPR011990 GO:0005515
Lsi02g00067 1273 Pfam PPR repeat 746 769 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat 345 367 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat 573 601 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat 374 402 IPR002885 -
Lsi02g00067 1273 Pfam PPR repeat 544 567 IPR002885 -
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 124 236 IPR011990 GO:0005515
Lsi02g00067 1273 Gene3D Tetratricopeptide repeat domain 321 417 IPR011990 GO:0005515
Lsi02g00067 1273 SUPERFAMILY TPR-like 469 829 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00067 - - - bhj:120082449 1511.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00067 Lsi-Chr2:578395 Lsi01g01115 Lsi-Chr1:9215410 1.03E-85 dispersed
Lsi08g01673 Lsi-Chr8:24480307 Lsi02g00067 Lsi-Chr2:578395 6.95E-19 dispersed
Lsi02g00067 Lsi-Chr2:578395 Lsi02g02283 Lsi-Chr2:29396406 7.41E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g541 . . . . . Bpe13g00288 . . Cmo13g01180 . . . . . . Cpe20g00023 . . . . . . . . . . . . . . . . Cone16ag0162 . . Lsi02g00067 . . . . . . . . . . . . . . Cma13g01126 . Car13g00961 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00067 Lsi_Chr02 FPKM 72.998032 79.429657 86.974663 86.962349 92.257904 105.970856 83.299202 91.454071 99.632309 92.571732