Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00069 ATGGGAGAGGAAAACACATTGGTGCTTCATGGAATGTGGGCTAGCCCTTTTTCCAAAACGGTCGAACTTGCCCTTAAAATAAAGGGTATACCTTTCCGATATGTGGAAGAAGATCTTATGAACAAAAATCCAAACACAATCTTGAAATACAACCCTCTTCACAACAAACTCCCCATACTTCTCCACAATGGCAATTCCATTTGTGAATCGCTTCTGATTCTTGAATACATACAAGAATTGTTCGAGAGCACGGTGAAGGCGGTGAACGGGGGAGGGGAAGCACTAGAGAAAGCGGTTAAAGAAGTAAGGGAGAAGCTGAAAGTGGTTGAAGAACATGGAATGAAAGAGTTGTTGGGAGATGATGGAAGTAGATCAGAATTTGTGAATGGAGAAGAAATGGGGTTTGTAGACATAGTAATGTGGTCAGTTCTTGGAGCTTACAAGATCCATGAAGAGGTTTTGGGGGTCAAAATTATAGATGAAAATGAGACCCCAAGCGTGTATTCATGGCTCAACACCCTCATGAACCACCCCCTTGCGAATGCCATATTGCCTTCTAAAGAAAAGGTTATGGGCCTTCTTCAATACAGTCACAATTCAACTTCAACCGATTCGAGAATGACCTATTATGATCGAGTACTGCTTTACGGAATGTGGGCTAGCCCTTTTGCGAAAAGGATAGAACTCGCTCTCAAAATCAAAGGCATCCCTTTTGAATATGTGGAAGAAGATCTCCAGAACAAAAGCCCAGAGCTTCTCAAATTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCATAATGGAAGACCCATTTGCGAATCATCTCTAATTTTAGAGTACATAGAGGAAGTTTGGAACAACAATGGCCCTTCCCTTCTACCTCAAGATCCCTACAAACGAGCCCAAGTTCGATTCTGGGCTGATTTCGTTCAGAAACAGTTGTTTGATGGTATGCTTTTAGCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATTAAAGAAGTGAAAGAGAAGCTGAAAGTTGTTGAAGAACAGGGGTTGAAGATTTTGCTGGCAGAGGGAAGTCCATTTGTGAATGGAGACGAACTTGGATATTTGGACATAGGGATGTTGACAGTGCTTGGAAGGTACAAGATTTACGAAGAGTTTTTAGGAATGAAAATTGTAGAAGAAGAGGAGATTCCAATTTTGTTCTCATGGTTGAATAGATTGACAGAGCATCCTATTGCAAAGGAGGGAGCTCCTCCCAAACAAAAGGTTTTGGAGCTTCTTCACATCGTCAGGCAAAGATTTCTACACTCCCCTGCTGCTGCTTAA 1323 41.95 MGEENTLVLHGMWASPFSKTVELALKIKGIPFRYVEEDLMNKNPNTILKYNPLHNKLPILLHNGNSICESLLILEYIQELFESTVKAVNGGGEALEKAVKEVREKLKVVEEHGMKELLGDDGSRSEFVNGEEMGFVDIVMWSVLGAYKIHEEVLGVKIIDENETPSVYSWLNTLMNHPLANAILPSKEKVMGLLQYSHNSTSTDSRMTYYDRVLLYGMWASPFAKRIELALKIKGIPFEYVEEDLQNKSPELLKFNPVYKKVPVLVHNGRPICESSLILEYIEEVWNNNGPSLLPQDPYKRAQVRFWADFVQKQLFDGMLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKILLAEGSPFVNGDELGYLDIGMLTVLGRYKIYEEFLGMKIVEEEEIPILFSWLNRLTEHPIAKEGAPPKQKVLELLHIVRQRFLHSPAAA 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 589600 594257 + Lsi02G000690.1 Lsi02g00069 654811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00069 440 CDD GST_N_Tau 213 286 - -
Lsi02g00069 440 Gene3D - 78 204 - -
Lsi02g00069 440 Pfam Glutathione S-transferase, N-terminal domain 9 82 IPR004045 -
Lsi02g00069 440 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
Lsi02g00069 440 SUPERFAMILY Thioredoxin-like 4 82 IPR036249 -
Lsi02g00069 440 Coils Coil 327 347 - -
Lsi02g00069 440 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 211 290 IPR004045 -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE 83 200 - -
Lsi02g00069 440 SFLD Main (cytGST) 212 436 - -
Lsi02g00069 440 Gene3D Glutaredoxin 3 77 - -
Lsi02g00069 440 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 63 193 IPR010987 -
Lsi02g00069 440 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 297 425 IPR010987 -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE 207 435 - -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE 1 82 - -
Lsi02g00069 440 SUPERFAMILY Thioredoxin-like 213 315 IPR036249 -
Lsi02g00069 440 SUPERFAMILY GST C-terminal domain-like 284 433 IPR036282 -
Lsi02g00069 440 Pfam Glutathione S-transferase, C-terminal domain 80 178 IPR004046 -
Lsi02g00069 440 Pfam Glutathione S-transferase, C-terminal domain 322 410 IPR004046 -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 82 IPR045073 -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 83 200 IPR045073 -
Lsi02g00069 440 SFLD Main.3: Omega- and Tau-like 212 436 IPR045073 -
Lsi02g00069 440 Coils Coil 92 112 - -
Lsi02g00069 440 CDD GST_C_Tau 298 426 IPR045074 GO:0004364|GO:0006749
Lsi02g00069 440 CDD GST_C_Tau 76 195 IPR045074 GO:0004364|GO:0006749
Lsi02g00069 440 SUPERFAMILY GST C-terminal domain-like 80 196 IPR036282 -
Lsi02g00069 440 Coils Coil 440 440 - -
Lsi02g00069 440 Gene3D Glutaredoxin 208 293 - -
Lsi02g00069 440 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 207 435 IPR045073 -
Lsi02g00069 440 Gene3D - 294 437 - -
Lsi02g00069 440 Pfam Glutathione S-transferase, N-terminal domain 215 283 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00069 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cmos:111431396 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01499 Lsi-Chr1:13066012 Lsi02g00069 Lsi-Chr2:589600 1.79E-46 dispersed
Lsi02g00069 Lsi-Chr2:589600 Lsi07g00834 Lsi-Chr7:9325883 8.82E-24 dispersed
Lsi02g00069 Lsi-Chr2:589600 Lsi04g00429 Lsi-Chr4:4091010 1.44E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g546 . Blo16g00186 . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00069 Csa01g00542 Chy12g01546 Cme12g01997 . . . . . . . . . . . Cma13g01130 . . . . . Bhi08g01176 . . Lac10g0072 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00069 Lsi_Chr02 FPKM 1.121113 1.055293 0.641307 0.855451 4.974633 3.814958 6.211053 0.406331 0.64552 0.566352