Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00070 ATGAATAGCAAAGAACTTTACTGCCTTGCGTTATTCAGCAAATGCAGATCTCTTAGAACCGTGAAGCAAATCCATGCTTTTACATTCAAAACAGGCTTTAATTCCGATCCATTACTCGCCGGAAAGCTTATTCTACATTGTGCAGTCACACTTCCTGATTCTGTTCACTATGCTCGACGCCTCTTCCTCGACATTCGAAACCCAGATGTGTTCATGTACAACACTCTCATCCGTGGCCTTTCCGATTCTGACACTCCCTCCAATGCCCTTCAACTGTTTGTTGAAATGCGTCGCAAATCCATGGCTCTACCTGATAGCTTCTCTTTTGCCTTTCTGCTCAAAGCCGCCGCTAATTGCAGGGCTCTGACCAATGGGTTGCAATTGCATTGCCAAGCTATTGGTTATGGTCTGGATACCCATCTTTTTGTTGGGACAACGCTGATTAGCATGTATGCTGAATGTGCAAGCTTGGCCTTTGCACGCAAGGTGTTTGATGAAATGATTGAACCGAATATTGTTGCTTGGAATGCCATTGTTGCTGCGTGTTTTAGGTGCGAGGACGTTAAGGATGCAGAGCAATTGTTTCATTGTATGCCCATTAGAAACTTGACCTCGTGGAACATCATGCTTGCAGGGTACACAAAAGCAGGTGAGCTTCGGTTAGCTAGGGAGGTGTTTATGAAAATGCCTGTGAAAGATGATGTTTCGTGGAGTAGTATGATTGTTGGGTTCGCTCATAATGGCAACTTTAACAATGCTTTCGCATTTTTCAGGGAGTTGCGGCGGGAAGGGATGAGACCAAATGAGGTAAGTCTCACAGGTGTGCTTTCTGCATGTGCACAAGCTGGGGCATTCGAGTTTGGAAAAATCCTACATGGGTTTGTTGAAAAATCTGGCTTTCTGCAGATTATTTCAGTGAATAATGCACTGATTGATACTTACTCTAAATGTGGGAATTTGGATATGGCTCGTTTGGTCTTTGATAATATGCTGGAAAGGAGTGCCGTCTCTTGGACAGCCATGATTGCGGGGCTGGCAATGCATGGCTACGGGGAGGAAGCAATCAGATTATTTAATGAGATGGAGGAATCTAATATTAAGCCCGACGGTATTACCTTCATATCCATCTTGTATGCTTGTAGCCACGCCGGATTAGTTGATTTGGGATGTTCTTATTTTTCTAGGATGGTAAATACTTACGGTATTGAACCCGTAATTGAACATTATGGTTGCATAGTTGATCTTTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTTTGACTTTGTTTGTCAAATGCCAATTTCACCAAATGATATTGTCTGGAGGACTCTTCTTGGAGCTTGTAGCATTCATGGTAACTTAGATCTGGCAGGGCAAGTAAAGAGACGACTCTCCAAACTTGATCCCGAAAATTCTGGAGATCATGTTCTTTTGTCAAACATTTATGCTGTTGCAGGGAAATGGAAGGATGTTGCCACGTTAAGAAGATCAATGACTCACCATAGGCTTAAGAAAACTCCAGGTTGGAGCATGATTGAAGTCGATAGAATCACGTATAGTTTTGTTGCAGGAGAAAAGCAAAATGCCATGGCAGTAGAGGCACATCAAAAGCTAAGGGAGATAATGTCAAGACTAAGGATAGAAGGAGGTTATGTTCCAGAAGTTGGAAGTGTATTGCATGATATAGAAATGGAAGAAAAGGAAGACTCTGTTTCACAGCACAGTGAGAAACTAGCAGTAGCATTTGGGATGGCGAGGCTGCCGAGAGGAAGAGCCATAAGAGTGGTGAAGAATTTAAGAATTTGCAGGGACTGTCACACTGTAATGAAGCTGATTTCTAAGGTCTATGAAGTAGAAATTGTGGTGAGAGATAGAAGTCGTTTCCACTCTTTCACAGATGGTTCTTGTTCGTGCAGAGACTATTGGGAATTCAAATCTATAGTGTATAAAGCTTATGGATGTTGGTCATTGAAATGGGATGGCACTGCTATAAGATTTTGGCTATTTACAACTTACAAATCCCGCAGACCCTTTTTTCCGCACAACGCTTACTTTCTAAAGCCCCTTACAGTTAGAGCTTCGACCACTCTAGATTACTCCAAACCCTCTTCAGAGGCGACATCATCGACCCCATTAAAGGCTAGTAACTGGCAGTGGAAATTCAAAGACAATCTGATAAACATCTATTATGAGGAATATGAAAGCCAGAGTGCTGATCCACCTAAAGATATTCTCCTGATACCGACGATTTCTGATGTTAGCACTGTGGAGGAATGGAGAATAGTGGCGAGAGAACTTGTACAAAAGGATAGTAAAGTCAATTGGCGTGCTACAATTGTTGATTGGCCTGGTCTGGGCTTCTCTGATAGGCCAAAGATGGATTACAATGCTGACGTGATGGAGAAGTTCTTAGTAGACTTGATCAATGCTCCTAATGGTCCATTGAGCAACTCAAAAGATGACTTGGTGGTATTTGGAGGAGGCCATGCGGCTGCACTAACAATTCGTGCAGCAAATAGGGGTTTGGTGAAGCCAAGGGGCATTGCCGCTGTTGCACCTACTTGGGCTGGACCACTTCCTATCGTATTTGGTCGAGATTCCAACATGGAGTCAAGGTATGGATTTCTTAGAGGCACATTAAGAGCACCTGCTGTTGGTTGGATGATGTATAATATACTCGTCAGCAATGAAAATGCAATTGAATCACAGTATAAATCTCATGTATATGCCAACCCCGACAATGTTACTCGAGAAATCATTGAAAGCAGATATGCACTGACTAAAAGAGAGGGTGCCCGTTATGTGCCTGCTGCTTTCTTGACTGGTCTTCTCGATCCCGTTAAATCCCGAGAAGAGTTTGTCGAACTGTTTGCAGGTTTGGATGGAAAGATACCAGTTTTGGTTGTATCAACAGAAAAATCTCCAAAGAGGTCAAAGGCAGAAATGGAAGCTCTACGAGGAGCCAAAGGGGTGAGCAAGTTTGTCGAGTTGCCAGGAGCCCTTCTGCCACAAGAAGAGTATCCAACAGTAGTTGCAGAGGAGCTCCATCAATTCTTGAAGGAGAATTTTGAAGCTGCAGATTGA 3084 43.22 MNSKELYCLALFSKCRSLRTVKQIHAFTFKTGFNSDPLLAGKLILHCAVTLPDSVHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSMALPDSFSFAFLLKAAANCRALTNGLQLHCQAIGYGLDTHLFVGTTLISMYAECASLAFARKVFDEMIEPNIVAWNAIVAACFRCEDVKDAEQLFHCMPIRNLTSWNIMLAGYTKAGELRLAREVFMKMPVKDDVSWSSMIVGFAHNGNFNNAFAFFRELRREGMRPNEVSLTGVLSACAQAGAFEFGKILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLERSAVSWTAMIAGLAMHGYGEEAIRLFNEMEESNIKPDGITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCIVDLYGRAGKLQQAFDFVCQMPISPNDIVWRTLLGACSIHGNLDLAGQVKRRLSKLDPENSGDHVLLSNIYAVAGKWKDVATLRRSMTHHRLKKTPGWSMIEVDRITYSFVAGEKQNAMAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEMEEKEDSVSQHSEKLAVAFGMARLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTDGSCSCRDYWEFKSIVYKAYGCWSLKWDGTAIRFWLFTTYKSRRPFFPHNAYFLKPLTVRASTTLDYSKPSSEATSSTPLKASNWQWKFKDNLINIYYEEYESQSADPPKDILLIPTISDVSTVEEWRIVARELVQKDSKVNWRATIVDWPGLGFSDRPKMDYNADVMEKFLVDLINAPNGPLSNSKDDLVVFGGGHAAALTIRAANRGLVKPRGIAAVAPTWAGPLPIVFGRDSNMESRYGFLRGTLRAPAVGWMMYNILVSNENAIESQYKSHVYANPDNVTREIIESRYALTKREGARYVPAAFLTGLLDPVKSREEFVELFAGLDGKIPVLVVSTEKSPKRSKAEMEALRGAKGVSKFVELPGALLPQEEYPTVVAEELHQFLKENFEAAD 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 595161 601682 + Lsi02G000700.1 Lsi02g00070 654812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00070 1027 SUPERFAMILY alpha/beta-Hydrolases 724 1020 IPR029058 -
Lsi02g00070 1027 PANTHER OS01G0913400 PROTEIN-RELATED 11 583 - -
Lsi02g00070 1027 PANTHER - 11 583 - -
Lsi02g00070 1027 Pfam PPR repeat family 68 117 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat family 232 280 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat family 334 380 IPR002885 -
Lsi02g00070 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lsi02g00070 1027 Gene3D alpha/beta hydrolase 721 1025 IPR029058 -
Lsi02g00070 1027 Gene3D Tetratricopeptide repeat domain 295 546 IPR011990 GO:0005515
Lsi02g00070 1027 Gene3D Tetratricopeptide repeat domain 203 294 IPR011990 GO:0005515
Lsi02g00070 1027 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Lsi02g00070 1027 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Lsi02g00070 1027 TIGRFAM PPR: pentatricopeptide repeat domain 205 230 IPR002885 -
Lsi02g00070 1027 TIGRFAM PPR: pentatricopeptide repeat domain 308 333 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat 408 432 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat 308 333 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat 173 199 IPR002885 -
Lsi02g00070 1027 Pfam PPR repeat 205 230 IPR002885 -
Lsi02g00070 1027 Pfam Alpha/beta hydrolase family 759 1013 IPR000073 -
Lsi02g00070 1027 Gene3D Tetratricopeptide repeat domain 130 202 IPR011990 GO:0005515
Lsi02g00070 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Lsi02g00070 1027 Pfam DYW family of nucleic acid deaminases 550 642 IPR032867 GO:0008270
Lsi02g00070 1027 Pfam E motif 451 513 IPR046848 -
Lsi02g00070 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Lsi02g00070 1027 Gene3D Tetratricopeptide repeat domain 22 129 IPR011990 GO:0005515
Lsi02g00070 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00070 - - - csv:101219230 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00070 Lsi-Chr2:595161 Lsi06g00945 Lsi-Chr6:19384143 6.28E-36 dispersed
Lsi02g00070 Lsi-Chr2:595161 Lsi02g02703 Lsi-Chr2:33403074 1.26E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012580 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00070 Lsi_Chr02 FPKM 1.677937 1.944708 2.668767 2.581563 3.557271 4.428667 3.521503 2.16382 2.135441 2.347553