Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00073 ATGTCGGAGAAAAGCATGCTTCCCACTAGGTTATTTTTGTACTTGATAACCATATCTATGTTCCTTCTAATCCTTTCTTCTGTATTCATTCTACAATCCAACTACAATTCATTCTTCCACAGTTCAGTACTCAAGTTCATTGTTGTTAATAATACTTCAAATTACCTAAAACCCAATGTGGAGAATGAACCAATGGAGCTTCCTATGCAAGCTGTGGAAGCTCCCCCTGTGGAATCCAAAGAAGCCATTAGAGATAGGGATATTGATTATCCAGTTTCTAATGTTATCAAGGATGAAGACTCTGTAGAAAATCAGTCAGACTTGGCTTGTGATCCTGCAAAGGCTCGTTTGAGAGTATTCATGTATGATCTTCCACCTTTATATCACTTTGGATTATTGGGATGGAAGGGAGAGAAAGATCAAATTTGGCCTAATGTCAGTAATAGAAGTCAAATCCCATCATACCCAGGTGGGCTGAATTTACAGCACAGTATGGAATACTGGCTTACACTTGATCTTTTATCGTCGAATGTCCCCAATATGGATCATACTTGCACTGCAGTTAGGGTGAAGAATTCAAGTCAAGCAGATGTCATTTTTGTGCCTTTTTTCTCATCTTTGAGTTACAACCAACATTCTAAGTTACATGGGAAGGAGAAAATTAATGTGAACAAGATATTGCAGCATAAGTTGATCCATTTTCTGTTTGGTCAGAAGGAGTGGAGGCGAGTGGGTGGAAAGGATCATCTTGTAATTGCTCACCACCCGAATAGTATGTTGGATGCGAGAAAGAAACTCGGCTCGGCTATGTTTGTGCTTGCAGATTTTGGAAGGTACCCAGCTGCAATTGCAAATGTTGAAAAAGATATTATTGCTCCTTACAGACATGTAGTGAAGACAGTTCCTAGTACCAAATCTGCCACATTTGATGAGCGTCCTATTTTGGTGTACTTTCAAGGAGCTATATACAGGAAGGATGGAGGAGTAGTTCGTCAAGAACTATATTACCTTCTGAAAGATGAGGAAGACGTTCATTTTACTTTTGGAAGTGTTAAGGGGAATGGAATCAACAAGGCAGGCCAAGGAATGGCCTCATCCAAGTTCTGCCTTAATATTGCAGGAGACACCCCATCGTCAAATCGACTTTTTGATTCTATTGCAAGTCATTGTGTTCCTGTTATTATAAGTGACGATATTGAGCTGCCATATGAAGATGTCTTGGACTACTCAGAGTTTTGCGTCTTTGTTCGAGCAGTAGATTCTATAAGGAAAGGTTATCTACTGAATCTTCTTCGTGGAATTGGACGAGAAAGGTGGACAAAGATGTGGGATAGAATCAAGGAAATTGTGCATGAATTTGAATATCAGTATCCATCTCAAAGTGGTGATGCTGTTGATATGATTTGGCAAGCAGTGTCCCGTAAAGTGTCAAAAATAAAATCTAATCGGAATAGGAAGAACAGGTACCGTAGATCTCAACTTCTCCTAAAGAACAGTTGA 1500 39.47 MSEKSMLPTRLFLYLITISMFLLILSSVFILQSNYNSFFHSSVLKFIVVNNTSNYLKPNVENEPMELPMQAVEAPPVESKEAIRDRDIDYPVSNVIKDEDSVENQSDLACDPAKARLRVFMYDLPPLYHFGLLGWKGEKDQIWPNVSNRSQIPSYPGGLNLQHSMEYWLTLDLLSSNVPNMDHTCTAVRVKNSSQADVIFVPFFSSLSYNQHSKLHGKEKINVNKILQHKLIHFLFGQKEWRRVGGKDHLVIAHHPNSMLDARKKLGSAMFVLADFGRYPAAIANVEKDIIAPYRHVVKTVPSTKSATFDERPILVYFQGAIYRKDGGVVRQELYYLLKDEEDVHFTFGSVKGNGINKAGQGMASSKFCLNIAGDTPSSNRLFDSIASHCVPVIISDDIELPYEDVLDYSEFCVFVRAVDSIRKGYLLNLLRGIGRERWTKMWDRIKEIVHEFEYQYPSQSGDAVDMIWQAVSRKVSKIKSNRNRKNRYRRSQLLLKNS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 642125 645037 + Lsi02G000730.1 Lsi02g00073 654815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00073 499 Pfam Exostosin family 114 426 IPR040911 -
Lsi02g00073 499 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 2 488 IPR004263 GO:0006486|GO:0016757
Lsi02g00073 499 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 2 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00073 - - - csv:101219466 923.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00073 Lsi-Chr2:642125 Lsi02g01918 Lsi-Chr2:25098397 2.35E-58 dispersed
Lsi01g00763 Lsi-Chr1:6014620 Lsi02g00073 Lsi-Chr2:642125 6.13E-14 transposed
Lsi07g01328 Lsi-Chr7:19445238 Lsi02g00073 Lsi-Chr2:642125 3.99E-09 transposed
Lsi02g00073 Lsi-Chr2:642125 Lsi08g00866 Lsi-Chr8:17042914 1.99E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g553 . . . . . Bpe13g00294 Bma06g00171 . Cmo13g01186 . . . . . . Cpe20g00018 . . . . . . . . . . . . . . . . Cone16ag0169 . . Lsi02g00073 Csa01g00550 Chy12g01540 Cme12g01992 . . Bda11g01702 . . . . . Sed08g2069 . . Cma13g01133 . Car13g00965 . . . Bhi08g01166 Tan05g2441 Cmetu12g0527 Lac10g0078 Hepe07g2508 . . Cla04g01198 Cam04g1257 Cec01g1768 Cco01g1815 Clacu04g1287 Cmu04g1263 Cre01g1556 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008229 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00073 Lsi_Chr02 FPKM 3.178339 3.144727 8.892519 9.56183 13.013779 13.40923 14.418756 14.902294 13.004899 12.784635