Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00079 ATGACGATGTATCATACAAGAAACATTGGACATCCTTTGATCAATCTTGTGAGGTTGAAAGGTTTTCCTATTCTGCAGCAACTACAATTGGAAGAGCGCCTACTTCGAAACTCATCAGATAATTGGTGTATCATAAATGATGGGACAGATAATCCAACTGTTGTGATGGGCGTTTCTGGGAAACCTGATGAGCTCCTTGACATCAAATCTGTGTTAGGGGATCAAATTCCAGTCATCAGAAGGTTCACAGGGGGTGGAACTGTTATTGTTGATCACAACACAGTATTTGTCACCTTCATATATTATGTCTTTGGTAACCGCAAGTTTGGTGGCAATGCTCAGTCCATTACTAAAAGCCGATGGATCCACCATACATCTTTTCTGTGGGACTATGAGGTTGGGAATATGACATATCTGAAACATCCAAAACGGGTTCCTGATTACCGTGAGGCAAGGAGCCACTTGGATTTTTTATGCAGCTTGAAGGACTACATGCCAAGACATGTATTTATTGACAAAACAATAGAAGCAATTGAAACTCAGTTTGCTACGAGTTTAAAGCAATTAAAAGAATGTGAATATTCTTTGACTGGAAACTATAGTCCCACAACAAGGATGCTGACAGAGCAAGAATTGGAAACAGCTGCAGGTTGTGTATCTCAAGATAACAAGCTTGAGAAAGTCTTGGACATAGCATTATAA 702 39.74 MTMYHTRNIGHPLINLVRLKGFPILQQLQLEERLLRNSSDNWCIINDGTDNPTVVMGVSGKPDELLDIKSVLGDQIPVIRRFTGGGTVIVDHNTVFVTFIYYVFGNRKFGGNAQSITKSRWIHHTSFLWDYEVGNMTYLKHPKRVPDYREARSHLDFLCSLKDYMPRHVFIDKTIEAIETQFATSLKQLKECEYSLTGNYSPTTRMLTEQELETAAGCVSQDNKLEKVLDIAL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 682832 687574 + Lsi02G000790.1 Lsi02g00079 654821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00079 233 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 2 100 - -
Lsi02g00079 233 Gene3D Bira Bifunctional Protein; Domain 2 13 102 IPR045864 -
Lsi02g00079 233 Gene3D Bira Bifunctional Protein; Domain 2 103 216 IPR045864 -
Lsi02g00079 233 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 102 217 - -
Lsi02g00079 233 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 102 217 - -
Lsi02g00079 233 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 2 100 - -
Lsi02g00079 233 SUPERFAMILY Class II aaRS and biotin synthetases 15 196 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00079 - - - csv:101218442 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00079 Lsi-Chr2:682832 Lsi05g01221 Lsi-Chr5:20107307 3.34E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g564 . . . . . Bpe13g00296 Bma06g00169 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0841 . . . Lsi02g00079 Csa01g00557 Chy12g01535 Cme12g01985 . . Bda11g01704 . . . . . Sed08g2077 . . . . . . . . Bhi08g01153 Tan05g2433 Cmetu12g0183 . Hepe07g2503 . . Cla04g01192 Cam04g1249 Cec01g1760 Cco01g1807 Clacu04g1279 Cmu04g1256 Cre01g1549 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011637 1 5 0 1 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 2 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00079 Lsi_Chr02 FPKM 11.113344 13.018901 7.678507 6.70627 4.599556 3.413347 5.735408 0.0 0.0 0.0