Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00081 ATGGAAATCGCGGACTATGGGAATAAAACGACGGCGTTGAGTCCAGCATTGTACGACAATGGGCTGAGTTGTGGGGCTTGTTTTGAGGTTAAGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCTATTGCCGGGGTCATCCCTGTCGCTTATCGAAGGGTTAAATGTGCAAGAAAAGGAGGAATAAAGTTCAGAATACAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGTGCTGGAGATGTTCATGCAGTTTATATCAAAGGGGGTAGGAATAGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAATCCCTTTCTTTTAAGGCTTCGGCCGCTGTCTTCCTCGCGTCGAGCTCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCCTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTTTGGGACTTGCAGAGGATCGTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAACGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATATTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG 1203 46.22 MEIADYGNKTTALSPALYDNGLSCGACFEVKCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVIPVAYRRVKCARKGGIKFRIQGNPNFNLVLISNVGGAGDVHAVYIKGGRNSWKAMVRNWGQNWQSNDNLVGQSLSFKASAAVFLASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 694390 698036 - Lsi02G000810.1 Lsi02g00081 654823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00081 400 PRINTS Expansin/Lol pI family signature 79 95 IPR007118 GO:0005576
Lsi02g00081 400 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Lsi02g00081 400 PRINTS Expansin/Lol pI family signature 133 147 IPR007118 GO:0005576
Lsi02g00081 400 Pfam Chlorophyll A-B binding protein 212 371 IPR022796 -
Lsi02g00081 400 Pfam Expansin C-terminal domain 97 159 IPR007117 -
Lsi02g00081 400 PRINTS Expansin signature 71 84 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 5 19 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 107 128 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 142 163 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 43 53 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 54 71 IPR002963 GO:0009664
Lsi02g00081 400 PRINTS Expansin signature 95 107 IPR002963 GO:0009664
Lsi02g00081 400 Pfam Lytic transglycolase 10 86 IPR009009 -
Lsi02g00081 400 Gene3D - 1 92 IPR036908 -
Lsi02g00081 400 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 106 198 IPR007117 -
Lsi02g00081 400 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 156 400 - -
Lsi02g00081 400 SUPERFAMILY Chlorophyll a-b binding protein 202 398 - -
Lsi02g00081 400 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 156 400 IPR001344 GO:0009765|GO:0016020
Lsi02g00081 400 SUPERFAMILY Barwin-like endoglucanases 5 114 IPR036908 -
Lsi02g00081 400 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 96 IPR007112 -
Lsi02g00081 400 SUPERFAMILY PHL pollen allergen 93 159 IPR036749 -
Lsi02g00081 400 Gene3D - 96 187 IPR036749 -
Lsi02g00081 400 Gene3D Chlorophyll a/b binding protein domain 212 391 - -
Lsi02g00081 400 SMART dpbb_1 10 86 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00081 Lsi-Chr2:694390 Lsi11g00969 Lsi-Chr11:15332481 1.13E-69 dispersed
Lsi06g00351 Lsi-Chr6:3836682 Lsi02g00081 Lsi-Chr2:694390 6.86E-55 transposed
Lsi07g00396 Lsi-Chr7:4234573 Lsi02g00081 Lsi-Chr2:694390 6.69E-06 transposed
Lsi02g00081 Lsi-Chr2:694390 Lsi02g01475 Lsi-Chr2:20497709 2.04E-76 wgd
Lsi02g00081 Lsi-Chr2:694390 Lsi04g00406 Lsi-Chr4:3973635 2.69E-73 wgd
Lsi02g00081 Lsi-Chr2:694390 Lsi06g01458 Lsi-Chr6:25126453 7.90E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00081 K08910 - csv:101218675 473.011