Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00086 ATGAACCGTACATTCAATTCATACCCAGATGAAAATTATGCAAATGTTAGAAGATTGATGAGGCAGACTGTGGATGATGATCACAAGAGCCTATCGGACAAGGATCCGCACTGTGATTTGAAGAGCGACCACGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAAGTGAAGGTTCAGATGTGTGGATTTCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGATGGAGATCTACATACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGGTTCTTGTGTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTCATGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTTATACTGAATCTTACAACAAAACTTTGGAACAGCTCAAGTCTAATGGTAGTAGCAGCTTCTCAGACTGTAAATATCTTCTGTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTTGCTTCGGCGTTTCTTTATGCTCTCCTCACAAATCGTGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTTCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTCCTAATTGCTATGGTAAAATAATGAAGAATAGCATCACCCCAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCATTTGGTCCATGATTATGATGACGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTTTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTTCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAAAAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCGGTGAATTCGGTTTGGGGACTGATTACGAGATATTATCAAGCTTACTTGGCTAGAGCTAGTGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTAGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGAGAGGCAAACCAATGTCGTTGGTCAAGCTAGTAATCAAAAGTCAAAGGCCGTGCTGATAACTTCCTTGAATGCTGGTTACTTTGAGAAGTTGAGAGATATTTACTGGGAGAATCCAACGGTAACAGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACCGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAAGGTCTTGGCGGTCTAAAACCATGGATATTGTACAAACCCGAAAATCGTACTGCACCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTCGTTCCTCATGTGAAGCATTGCGAGGACATGGCCTGGGGACTTAAGTTGGTTGATCATTATGATTGA 1758 41.92 MNRTFNSYPDENYANVRRLMRQTVDDDHKSLSDKDPHCDLKSDHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVSEGSDVWISQWNSDPVDSKDGDLHTVIQPVDKLLSGLLSAKHGVGSCVSRYNSVAYQHKLAHEPSSYLISKLRSYEDLHKRCGVYTESYNKTLEQLKSNGSSSFSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDEFSKFNQNSPNCYGKIMKNSITPDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPKKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVGQASNQKSKAVLITSLNAGYFEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVKHCEDMAWGLKLVDHYD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 722278 725396 - Lsi02G000860.1 Lsi02g00086 654828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00086 585 Gene3D - 188 241 - -
Lsi02g00086 585 Pfam Xyloglucan fucosyltransferase 109 554 IPR004938 GO:0008107|GO:0016020|GO:0042546
Lsi02g00086 585 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 32 583 - -
Lsi02g00086 585 Gene3D - 368 532 - -
Lsi02g00086 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 32 583 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00086 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00086 Lsi-Chr2:722278 Lsi07g00815 Lsi-Chr7:9089321 4.59E-164 dispersed
Lsi02g00086 Lsi-Chr2:722278 Lsi04g00398 Lsi-Chr4:3907188 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00086 Lsi_Chr02 FPKM 30.122684 30.723629 42.871273 47.681324 22.049791 20.471357 19.980139 49.305538 55.874142 48.898685