Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00087 ATGAAACATTTGAATGTCTCTCTCTCCCATGTCAGCAAAGGTAGAAGAAGGCCAACCATTGCCGATAAGCAATCCCTGAATTCTGGTGACAGGGTTCTTCAGTGGAAGTCTAAAATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTTTCTCCCTCAATCCTTTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCTGATATTGTTAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTCCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGTGGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTCATTGAGAGCCAAGTAAAGAAAATCTCAGAATTAAGAAGACTATGTGCTGAAAAGGGAGTGAACCCGTGGATCGAAGTGGATGGTGGAGTTGGTCCAGGCAACGCATACAAGGTTCATACAATAACATTTTCTGAAATAGCAACTTTATTACATGAGTTTCTAAAGCAAGCTTTCGATTACCACCAATTGCAGGTCATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCCATAAAAGGAATCAAAACAAGCAAAAGGCCAGAGGCAGTTCCAAGAGTCTCCAACTGCATAGGTAGCAGAACATTTTGTTCTTCAAGCTCTTATCCCAGCCATGGTTGCTACCTCCACAGTTTTATTCCTTGTGAAAAGAAGCCTTGCCAGGCAAGGGTCAAATGCAAGAAACCTTTCCTTCCAAAAGATTTTGACGCGGATGTCCAATCGCATTGTATCGAATTTGAGAGAGAAATGCAAGTTAACGAACCCGCCATTTCCGCCATTGGAAGAAGCTCCAGAGTTGCGCAACAATTTCTTTTCTCTGTATTAAAGTGCTGTAGATCTGTTCGTAATCTTGCAAAAATCCATGCTCAAATAGTCGTCAACGACTTTGCCCAGAAAAATTACATCCTTGTCAACCTTTTGTCGCTCTATATATCTTTTGGTTCTCTTGGAAGTGCCCAGAAAGTTTTCGAGGATATTAATGCACCGAGTACGACTGTGTGGAACCAGATAATTCGAGGCCATGCGGGGAGCAAAACGCCACAAGAATCAATTGCGCTGTTCAAACGAATGACAGCGACGGAAGTTGAAGCTGATGGGTTCACGTATTCTTTTCTTCTGAGTGCGTGTGTGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTAGCAAATGGGTATTGGTCTAATTTGTATGTTAGAACGAATTTGATCAATTTATACGCAAATGGTGGAGATGGAGGGGATTTTGATCTTAAGCGTGCGCGTTACATGTTTGATGAAATGCCTGACTCAAATGTCGTGGGCTGGAATTCCTTACTCGCAGGATATGTTAGAAGTGGTGATTTTGATGGGGCTAGAAAAGTTTTTGACGAGATGCCTGAGAGGAATGTCCAGACATGGACTACAATGGTTGCAGGGTTTGGTCAAAATGGCCATTGTAAGCTAGCTTTGTCACTATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAGACTTGACATTGGGAAAATGGATTCATTGGTATGTTGATAGAACATGGCGGAGTAAACACCTCCCAGTATTGGTGTCTCTGAGCAATTCTCTTATGCATATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAAGTGTTTGAAGAAATACCCCAACGAAACACCGTGTCTTGGTCAAGCATTATCACTGGGTTTGCCAAACAGGGTCGTGGAGAAGAAGCTATTAGAGTCTTTCAGTTGATGCTGTGCTCTGGCCAAAATGAAGTGAGACCTGACGAGATAACCTTCATTGGAGTTCTCACTGCTTGTAGCCATGCTGGTTTGATCATCGATGGCATCCGACTTTTCCGGTCTATGCACAAAAATTTCGGAGTCATACCACAGATTGAACATTATGGATGCATGGTTGATCTCTTGAGCCGTGCAGTATGCCAATGGAGCCAAACAATGCTGTGTGGGGAGCACTTCTCAATGGCTGTAGAATTCACAAGAATGACGAGATCGCATCCCATGTTGCGAAACAATTGGCTTTCAAAATCGATCCCAGCAACTAATGTTCATGCTGCAGACGAACGTTGGCGAGACACTGCCATTTACGAGAACATGCTCGACGTAGGAGTGAAGAAACCTTCAGGAAGAAGTTGTATTGAGATTAATGGAGTCGTATGTGATTTCGTGGTGAGGGATAAGACTCATAAGGATGCGAGTTGA 2751 43.4 MKHLNVSLSHVSKGRRRPTIADKQSLNSGDRVLQWKSKMAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASARVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPGNAYKVHTITFSEIATLLHEFLKQAFDYHQLQVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPRVSNCIGSRTFCSSSSYPSHGCYLHSFIPCEKKPCQARVKCKKPFLPKDFDADVQSHCIEFEREMQVNEPAISAIGRSSRVAQQFLFSVLKCCRSVRNLAKIHAQIVVNDFAQKNYILVNLLSLYISFGSLGSAQKVFEDINAPSTTVWNQIIRGHAGSKTPQESIALFKRMTATEVEADGFTYSFLLSACVRSRLFREGEQIHGRVLANGYWSNLYVRTNLINLYANGGDGGDFDLKRARYMFDEMPDSNVVGWNSLLAGYVRSGDFDGARKVFDEMPERNVQTWTTMVAGFGQNGHCKLALSLFNQMRRAGVELDQVALVAALSACAELGDLTLGKWIHWYVDRTWRSKHLPVLVSLSNSLMHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGRGEEAIRVFQLMLCSGQNEVRPDEITFIGVLTACSHAGLIIDGIRLFRSMHKNFGVIPQIEHYGCMVDLLSRAVCQWSQTMLCGEHFSMAVEFTRMTRSHPMLRNNWLSKSIPATNVHAADERWRDTAIYENMLDVGVKKPSGRSCIEINGVVCDFVVRDKTHKDAS 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 724451 733153 + Lsi02G000870.1 Lsi02g00087 654829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00087 916 PANTHER - 33 283 - -
Lsi02g00087 916 PANTHER - 309 341 - -
Lsi02g00087 916 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 127 141 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 Pfam Ribulose-phosphate 3 epimerase family 100 284 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 Gene3D Tetratricopeptide repeat domain 581 697 IPR011990 GO:0005515
Lsi02g00087 916 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 309 341 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Lsi02g00087 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Lsi02g00087 916 Pfam PPR repeat 632 661 IPR002885 -
Lsi02g00087 916 Pfam PPR repeat 529 558 IPR002885 -
Lsi02g00087 916 Gene3D Tetratricopeptide repeat domain 455 580 IPR011990 GO:0005515
Lsi02g00087 916 Pfam PPR repeat family 733 784 IPR002885 -
Lsi02g00087 916 Pfam PPR repeat family 598 631 IPR002885 -
Lsi02g00087 916 Gene3D Tetratricopeptide repeat domain 698 766 IPR011990 GO:0005515
Lsi02g00087 916 Gene3D Tetratricopeptide repeat domain 767 854 IPR011990 GO:0005515
Lsi02g00087 916 SUPERFAMILY Ribulose-phoshate binding barrel 93 341 IPR011060 -
Lsi02g00087 916 TIGRFAM PPR: pentatricopeptide repeat domain 736 765 IPR002885 -
Lsi02g00087 916 TIGRFAM PPR: pentatricopeptide repeat domain 602 630 IPR002885 -
Lsi02g00087 916 TIGRFAM PPR: pentatricopeptide repeat domain 632 664 IPR002885 -
Lsi02g00087 916 Gene3D Aldolase class I 88 344 IPR013785 -
Lsi02g00087 916 CDD RPE 99 338 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 231 253 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 33 283 IPR000056 GO:0005975|GO:0016857
Lsi02g00087 916 TIGRFAM rpe: ribulose-phosphate 3-epimerase 100 284 IPR026019 GO:0004750|GO:0006098
Lsi02g00087 916 Hamap Ribulose-phosphate 3-epimerase [rpe]. 97 340 IPR026019 GO:0004750|GO:0006098
Lsi02g00087 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00087 - - - cmo:103488102 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00087 Lsi-Chr2:724451 Lsi02g01815 Lsi-Chr2:23933434 4.94E-14 dispersed
Lsi03g00386 Lsi-Chr3:4497002 Lsi02g00087 Lsi-Chr2:724451 9.97E-22 dispersed
Lsi02g00087 Lsi-Chr2:724451 Lsi05g02025 Lsi-Chr5:27248698 1.55E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00087 Lsi_Chr02 FPKM 4.851064 2.821731 1.441906 1.913217 0.968518 0.515776 1.252092 0.921815 0.858212 1.193198